Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1229 ATGGCTTTGACGGTCAATCAGCAACATCAATCAAACTTGAAGCATTTCTGCAAGATCTGTAAGAAAAGTTTCGGGTGTGGGAGAGCGCTGGGTGGTCACATGAGGGCGCATGGCATCGGCGACGCGAGCTGGAACCTCGACGACGATGAGGATGCTGCGAGTGACTGGGAAGAAAAGCAAGGCGGCAGCGGGCCACCGAGCATGAAACGCATGTATACTCTAAGAACAAACCCTAATAGATTGAAGAGTTGTAGGGTATGTGAGAATTGCGGTAAAGAGTTCTTGTCGTGGAAGTCCTTTCTTGAACATGGAAAATGCACCTCCGACGATGTGGAGTCGTCCCCGGTTTCTTCGCCGATGTCGGACGGTGAGTATGATGGCGAGGATGTCGTGGGTGGCCAGAGGGGTTGCAGATGGTCGAAACGTAAGAGATCATTCAGACCCAAATTTGGTACCTTGAACTCTATATGTCCTTCAAGTGAAGAAGAAGACCTAGCAAACTGTCTCATGATGTTGTCCAACGCCATTGTCGGTCCTCTCGCTGCCGCCACCGATCCGGAGGAGTCCAGTGCCTCGGCGAGCCGAGACGAGGAAAGAAGGAACCCCATAAACTTCATCACCCCAGTATCTTACTGTGTTCCTCCCGTGGATAATCATAAAGCCAAAAGTGTGGTTCCTAAAGGCTTGTTTGAATGCAAAGCATGCAAGAAAATCTTCAATTCTCATCAAGCGTTAGGTGGCCATAGAGCCAGCCACAAGAAAGTTAAAGGCTGTTTTGCTTCGAGACTCGACCATCTTGAAGATAAAGACGATGATGTCATAACCCATGAAGAGTTTCTTCCTATAAAATCAAACTCGACCGTTCATGATCATCCTTCCAATAATAATGCCACATTATTAATGGCGTCGTCTTCGTCCAAAAGAAAATCCAAAGTTCATGAATGTTCTATATGTCACCGGACTTTCTCGTCGGGACAAGCCTTAGGAGGACACAAGAGGTGTCATTGGATCACACCAAACGCACCAGCATCGTCCACATTGGCTAGGTTTCAGCAGTTTCAAGACCATATGGAGCGGTTGAATCAAATTCCCAAGTTTGATAACTCGGAGCCACTTGATCTGAAGCTCGACCTCAACCTTCCAGCTCCAGCCGGTGATCCGGCACGGCGGGACTTGTCAACGGAAATTTTCTTACAGCCATGGTTAGGAGGAACGACGACAAAGGAGAAGGATAAAATTAATAATTCTAACAGTCAATGTCACAGCCCAAGCAACCGCGAATTACAGCACCATCAGCACCAGCATCACTATGAAACTGAAAATGACAACGAAGAAGAAAAAATTAACAATGACAGTAATGTTTCGATGGAGAATGTTGAAGATGAAGCTGACAGTAAGGTGAAGTTAGCGAAGCTAAGTGAGCTAAAGGACATGAACATAGGTGGGAGTTCTTCCCCATGGTTGCAGGTAGGGATTGGTTCAACCACTGGTGTGGGAGCTGAACCACAATGA 1512 0.4709 MALTVNQQHQSNLKHFCKICKKSFGCGRALGGHMRAHGIGDASWNLDDDEDAASDWEEKQGGSGPPSMKRMYTLRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDDVESSPVSSPMSDGEYDGEDVVGGQRGCRWSKRKRSFRPKFGTLNSICPSSEEEDLANCLMMLSNAIVGPLAAATDPEESSASASRDEERRNPINFITPVSYCVPPVDNHKAKSVVPKGLFECKACKKIFNSHQALGGHRASHKKVKGCFASRLDHLEDKDDDVITHEEFLPIKSNSTVHDHPSNNNATLLMASSSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNAPASSTLARFQQFQDHMERLNQIPKFDNSEPLDLKLDLNLPAPAGDPARRDLSTEIFLQPWLGGTTTKEKDKINNSNSQCHSPSNRELQHHQHQHHYETENDNEEEKINNDSNVSMENVEDEADSKVKLAKLSELKDMNIGGSSSPWLQVGIGSTTGVGAEPQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1229 503 ProSitePatterns Zinc finger C2H2 type domain signature. 315 335 IPR013087 -
Prci12g1229 503 MobiDBLite consensus disorder prediction 408 425 - -
Prci12g1229 503 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Prci12g1229 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Prci12g1229 503 MobiDBLite consensus disorder prediction 478 503 - -
Prci12g1229 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 335 IPR013087 -
Prci12g1229 503 SUPERFAMILY beta-beta-alpha zinc fingers 310 336 IPR036236 -
Prci12g1229 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 37 IPR013087 -
Prci12g1229 503 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Prci12g1229 503 Pfam C2H2-type zinc finger 312 337 - -
Prci12g1229 503 Pfam C2H2-type zinc finger 230 254 - -
Prci12g1229 503 Pfam C2H2-type zinc finger 15 37 - -
Prci12g1229 503 Gene3D Classic Zinc Finger 12 106 - -
Prci12g1229 503 SMART c2h2final6 15 37 IPR013087 -
Prci12g1229 503 SMART c2h2final6 230 252 IPR013087 -
Prci12g1229 503 SMART c2h2final6 313 335 IPR013087 -
Prci12g1229 503 PANTHER OS02G0659100 PROTEIN 6 496 - -
Prci12g1229 503 MobiDBLite consensus disorder prediction 426 447 - -
Prci12g1229 503 MobiDBLite consensus disorder prediction 478 492 - -
Prci12g1229 503 MobiDBLite consensus disorder prediction 406 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1229 Prci-Chr12 22583844 22585998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1229 120 380 C2H2 Transcription Factor Family AT1G02040 35.849 2.91e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1229 - - ahf:112720137 638.647