Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1226 ATGGCTCTTTCCACTCCTCACCTTGTTCCACTCTCTCATTTCTTCAATCCTCTCGTCCCTTTCTTGTTATTCTTTCTCATAGTGAGCTCGTCCTCTTGCTCCAACCCTAAAAAATTTCTTAATTCATCATCATACACTTTTGATTCTGATTGGTCTCCGGCAGATGCTACATGGTACGGAGGCCCCAACGGCGACGGAAGTGAAGGCGGTGCTTGTGGCTATGGTGGTGCTGTAGGGCAAGCTCCATTTTATTCGATGATATCAGCTGGAGGTCACCTATATAAGTCAGGCAAAGGCTGTGGAGCTTGCTATGAGGTGAAGTGCTCATCGAATCCGGCTTGTTCAGGTAATCCAGTGACCGTTGTGATCACTGATGAGTGTCCAGGGTGTGGTTCATCTGAGAGATTTCACTTTGACTTGAGTGGTACTGCTTTTAGTGCCATGGCTGTTTCTGGTCAAGCTGATCAGCTACGCAATGCTGGCAAGTTGGACATTCAATATAGAAGTGTAAGGTGTAACTTCCCGGGGACATCCATAGCTTTCAAAGTGGACTCAGGATCGAACCCATATTATTTTGCTGTTGTGATAGAATATGAGAATGGTAATGGACTTGCCAATGTTGAGATCAAGGATGCTCAGAGCTCAGCATCATGGCGTCCCATGCAACAATCCTGGGGTGCAATTTGGAAGCTTGACTCTGGCTCACCTCTTCAGGCACCATTCTCTGTCCGCCTAACTTCTCCGGAGTCGCCGGAGTCTCAGAACACTGTTGAAGCAAGCAATGTGATCCCAGCCGGGTGGAGTCCGGGTCAGACTTACCGTTCTGTGGTGAATTTTGATTAA 843 0.4757 MALSTPHLVPLSHFFNPLVPFLLFFLIVSSSSCSNPKKFLNSSSYTFDSDWSPADATWYGGPNGDGSEGGACGYGGAVGQAPFYSMISAGGXHLYKSGKGCGACYEVKCSSNPACSGNPVTVVITDECPGCGSSERFHFDLSGTAFSAMAVSGQADQLRNAGKLDIQYRSVRCNFPGTSIAFKVDSGSNPYYFAVVIEYENGNGLANVEIKDAQSSASWRPMQQSWGAIWKLDSGSPLQAPFSVRLTSPESPESQNTVEASNVIPAGWSPGQTYRSVVNFD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1226 281 CDD DPBB_EXPB_N 51 173 - -
Prci12g1226 281 Pfam Lytic transglycolase 88 168 IPR009009 -
Prci12g1226 281 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Prci12g1226 281 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Prci12g1226 281 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Prci12g1226 281 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Prci12g1226 281 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Prci12g1226 281 SUPERFAMILY Barwin-like endoglucanases 43 177 IPR036908 -
Prci12g1226 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 276 IPR007117 -
Prci12g1226 281 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Prci12g1226 281 PRINTS Major pollen allergen Lol pI signature 89 100 IPR005795 GO:0005576|GO:0019953
Prci12g1226 281 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Prci12g1226 281 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Prci12g1226 281 PRINTS Major pollen allergen Lol pI signature 109 119 IPR005795 GO:0005576|GO:0019953
Prci12g1226 281 SMART dpbb_1 87 168 IPR007112 -
Prci12g1226 281 Gene3D - 175 280 IPR036749 -
Prci12g1226 281 Pfam Expansin C-terminal domain 180 265 IPR007117 -
Prci12g1226 281 Gene3D - 37 174 IPR036908 -
Prci12g1226 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 178 IPR007112 -
Prci12g1226 281 SUPERFAMILY PHL pollen allergen 179 276 IPR036749 -
Prci12g1226 281 PANTHER EXPANSIN-B3 27 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1226 Prci-Chr12 22136473 22138301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1226 31 280 Expansin Gene Family AT1G65680 61.355 1.67e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1226 - - pcin:129295689 354.755