Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1206 ATGAGCTTCTGCGTTCCCACCTGGGATGTTGACAACAATATTCCCTCAGCCACCAGAACCTCTCTTCCTTCTAACTCCAATTCCACCGTCCCTGATCTCCTCCCCACGTTTGACTATGAAGTTGCAGAACTTACATGGCAGAACGGGCAGATATGGATGAACGGGATGGGTCTGCCACGGCTTCCGGCGAAGTCCATCAACGCCTGCGTGGTGGCAAGTACAAGGTCCGATCCCTTGACCTCCCATTCAAAGTTTCGAGCAAGTGGCACCTTGGAGTCCATAGTCAATCAGGCAACACGTTTCACCCTGAACTCCAAAACCATGTCGCAAACTCTTGACGAAGACTGCGGCGGAGGGGGCGGTGACGAAGACAAGTTAGTGCCATGGTATGAACCTCAACGAGGCGGCGGTGGCGCTGCTGTATCGAACACCATGCCTATGGATGCCTTGGTTCCTTGCTCGATTCGTACGGACGAGCAGAGTACAGCAGTTGTGGATGAATCTATTGATGGAGGGATTGGCACGCGCGGCACTGGAATGGTTCGCTCAGCACATGTGTGTTCTCGAGGCGGAGACGGCGGCGGCGGCACTGCTGTGAGGCCTACTGGGGTGGCACCTGCTCCTGTAGCCCGCCAGTGGGATCAAAGTTTAAGTGAGAGAGACAGCCATCACGTGACACCGGACGCCGGCGACAGGGAATTGGATGTGGGTTATACTTCTGCTTCGATGGGTTCGCCGGAAAACGCAAGCTCGGTCAGGCTTTACACGAAGATGACCGTCGCTGATGACCATGATTCTGTTTGCCACAGTACACAGAGAGAAGAAGATGAGGATGAGGACAAAAAAGAAAGAACGGTAAAATCTTCATCGTCTAATAAACGGCGTAGAGCTGCTGATGTGCACAATCAGTCTGAAAGAAAAAGGAGAGACAAGATAAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAGGTGATAGACTACGTGAAGCAACTTCAAGCACAAGTGCAAATGATTAATAGAATGAGTCTGTCTTCCATGATGCTGCCAATGACTCTGCAACAGCAACAACTTCAACTCATGTCCATGATGACTGCAATGGGAATGGGATTAGGTATGGACATAAACACTATGGCTCGCCCTAACATGCCCGCCGTCCCTCCGATTCTCCACCCTACCGCCACTGCCAGTTTCATGCCGATGCCATCATGGGACGCTTCCACTGGCGGCAATCGACTTCAAGGAGCGGTGCCTGACTTCTTGTCCCAATTCCTGGCATGCCAAACACAGGTCTGA 1335 0.5176 MSFCVPTWDVDNNIPSATRTSLPSNSNSTVPDLLPTFDYEVAELTWQNGQIWMNGMGLPRLPAKSINACVVASTRSDPLTSHSKFRASGTLESIVNQATRFTLNSKTMSQTLDEDCGGGGGDEDKLVPWYEPQRGGGGAAVSNTMPMDALVPCSIRTDEQSTAVVDESIDGGIGTRGTGMVRSAHVCSRGGDGGGGTAVRPTGVAPAPVARQWDQSLSERDSHHVTPDAGDRELDVGYTSASMGSPENASSVRLYTKMTVADDHDSVCHSTQREEDEDEDKKERTVKSSSSNKRRRAADVHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIDYVKQLQAQVQMINRMSLSSMMLPMTLQQQQLQLMSMMTAMGMGLGMDINTMARPNMPAVPPILHPTATASFMPMPSWDASTGGNRLQGAVPDFLSQFLACQTQV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1206 444 MobiDBLite consensus disorder prediction 216 231 - -
Prci12g1206 444 Coils Coil 302 322 - -
Prci12g1206 444 Gene3D - 279 356 IPR036638 GO:0046983
Prci12g1206 444 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 415 IPR031066 -
Prci12g1206 444 MobiDBLite consensus disorder prediction 214 250 - -
Prci12g1206 444 FunFam transcription factor UNE10 isoform X1 291 356 - -
Prci12g1206 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 355 IPR036638 GO:0046983
Prci12g1206 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Prci12g1206 444 Pfam Helix-loop-helix DNA-binding domain 301 346 IPR011598 GO:0046983
Prci12g1206 444 MobiDBLite consensus disorder prediction 263 315 - -
Prci12g1206 444 CDD bHLH_AtPIF_like 296 361 IPR047265 -
Prci12g1206 444 SMART finulus 302 351 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1206 Prci-Chr12 20475233 20480181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1206 1 444 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.295 1.40e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g1206 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1206 - - ahf:112697399 381.719