Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1203 ATGCTTAATCATTATAAGGCTGTAGCACGTTATCGAGGTGGTGAAGGTCTCCCTCCAAACGTCAAAAGCGAAGGAGATATTGGTCTCCATCTTCTATTTCAATCCAAAAAACTTGGCTTTGTGGCAGCAAAGAGCAAACGTATCAAGCAAGCACAAGTTTTCTTGTTTCGTTTGGAAAGGCAAGTGACATTCTCAAAGACTCGTAATGGACTGTTAAAGAAGGCTTTTGAACTGTCAGTTCGGTGTGAAGCTGAGGTTGGTCTCATCATCTTCCCCCCCAGAGGCAAGCTCTTTGAATTTTCAAGCTCCAGCCTGCAGGAGACAATTGATCGTTACCACAAGTATATTAGAAATTCTCATTTCCCCAGACAAAATGTGCAGCATCTAACTCATGAAACAGCAAGTATGAAGAAGATTGAGCTTCTAGAAGCTTCAAAACGGAGAAGGTTTAAACACATGCTCACCACAAGAACTGCATGA 480 0.4208 MLNHYKAVARYRGGEGLPPNVKSEGDIGLHLLFQSKKLGFVAAKSKRIKQAQVFLFRLERQVTFSKTRNGLLKKAFELSVRCEAEVGLIIFPPRGKLFEFSSSSLQETIDRYHKYIRNSHFPRQNVQHLTHETASMKKIELLEASKRRRFKHMLTTRTA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1203 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 144 - -
Prci12g1203 159 SUPERFAMILY SRF-like 57 121 IPR036879 GO:0003677|GO:0046983
Prci12g1203 159 SMART madsneu2 48 103 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 59 100 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 ProSiteProfiles MADS-box domain profile. 57 104 IPR002100 GO:0003677|GO:0046983
Prci12g1203 159 Gene3D - 58 139 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1203 Prci-Chr12 20089488 20108588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1203 60 148 MADS-box Gene Family AT2G45660 67.021 6.06e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci12g1203 SRF-TF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1203 - - pcin:129289179 316.62