Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1157 ATGTTGGGGTACGAATGGGGGAACCCTACTCCGTCGACTATAGTGCTCGCCGGAAACGAAGAAGCTGCCGTTACCACTGCTGCAGACTCCGACCAGACCCACCGGCAAATCTTTGACCATTACGCTTCTCATTCCTTATTGCCGGAACATCTCCTTCATCAGCAGCACCAGCACCAGCCAGGGCCCACACAACACGCCACCGCAAGCTCCACCGCGGATTTCTCTCACTACCAGTTCAACCCTCAAACCAACCACCACCACCACCACCACCAGCATAACATCCAGCACTCGTTCTTCGATCCACGCGCCTACCCCGGCGCGTCCTCATCCTCCTACCCTCCGCCTCAGCCTCCGCCTCCTTCCATGCTCTCTCTTGACCCGCTTCCAGCCGTCAACGCCGCCCACTGTGGGCCAGGTGGGTTTCTGGTCGTTCCCAAGTCCGAGGACGTGGGTCGATCCACTGACTTTCCGGCGTCCAGAATTGGGCTCAACCTCGGTGGCCGCACGTACTTCTCATCGTCGGAGGATGACTTCATGAGCCGGCTCTACCGCAGGTCAAGGCCGGCCGAACCGGGGTCAATGATGATGGCATCGAACTCTCCACGGTGCCAAGCGGAAGGCTGCAATGCCGATCTATCACACGCCAAGCACTACCACCGCCGTCACAAGGTGTGCGAGTTTCACTCCAAGGCGGCCACCGTCATCGCCGCCGGCTTGACCCAGCGATTCTGCCAACAGTGCAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGAAAACGAAGCTGCAGGAAGAGACTTGCAGATCATAATCGTCGCAGAAGAAAAACCCAGCAGCCAAATCAAGAAATCCTGAAAACCCAGATCGAAAATTCTCGAAATTCTACTTTGGAAGTTGTTTCAAGATCTCCACCGGACTCCGGAGCTCAGGGGATGTCATCAGTGACGGTGGCAGTGTCGCCGCCGGACTATTTCCGGCAAACGGCGTATCAGAATCAGAGGACAAGTCCATCGACAACATCAAGCTCACTGTTCTTCTCTAGCGGGTAG 1050 0.5638 MLGYEWGNPTPSTIVLAGNEEAAVTTAADSDQTHRQIFDHYASHSLLPEHLLHQQHQHQPGPTQHATASSTADFSHYQFNPQTNHHHHHHQHNIQHSFFDPRAYPGASSSSYPPPQPPPPSMLSLDPLPAVNAAHCGPGGFLVVPKSEDVGRSTDFPASRIGLNLGGRTYFSSSEDDFMSRLYRRSRPAEPGSMMMASNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKTQIENSRNSTLEVVSRSPPDSGAQGMSSVTVAVSPPDYFRQTAYQNQRTSPSTTSSSLFFSSG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1157 349 ProSiteProfiles Zinc finger SBP-type profile. 200 277 IPR004333 GO:0003677
Prci12g1157 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 184 337 IPR044817 GO:0003677
Prci12g1157 349 MobiDBLite consensus disorder prediction 76 125 - -
Prci12g1157 349 MobiDBLite consensus disorder prediction 108 125 - -
Prci12g1157 349 MobiDBLite consensus disorder prediction 292 349 - -
Prci12g1157 349 FunFam Squamosa promoter-binding-like protein 14 194 264 - -
Prci12g1157 349 SUPERFAMILY SBT domain 201 280 IPR036893 GO:0003677|GO:0005634
Prci12g1157 349 Pfam SBP domain 203 276 IPR004333 GO:0003677
Prci12g1157 349 Gene3D - 194 264 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1157 Prci-Chr12 18456084 18459077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1157 1 250 SBP-box Gene Family AT1G02065 45.865 3.21e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci12g1157 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1157 - - gmx:100778566 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1157 12 18456084 18459077 Prci12g1157 12 18456084 18459077 ECH