Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1150 ATGACGCCTGCGACGCCGACGCGCCGCTTCACCCTCAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGCGTTGTTACCTTTTAACATCCTATTAACAACTTATGACATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTTCAAAATGCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCACTGAAGAGTAA 2139 0.417 MTPATPTRRFTLKSLGSRRPLNPTRWREFRGSYEDINLASTFSSMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNALLPFNILLTTYDIALIDQDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVQNAVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSTEE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1150 712 Gene3D - 265 575 IPR027417 -
Prci12g1150 712 Pfam Helicase conserved C-terminal domain 346 470 IPR001650 -
Prci12g1150 712 FunFam Putative helicase CHR10 263 574 - -
Prci12g1150 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 516 IPR027417 -
Prci12g1150 712 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 44 595 IPR031053 GO:0003678|GO:0006281|GO:0006338
Prci12g1150 712 SMART ultradead3 17 215 IPR014001 -
Prci12g1150 712 Pfam SNF2-related domain 44 325 IPR000330 GO:0005524|GO:0140658
Prci12g1150 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 207 IPR014001 -
Prci12g1150 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 517 IPR001650 -
Prci12g1150 712 SMART helicmild6 375 470 IPR001650 -
Prci12g1150 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 252 IPR027417 -
Prci12g1150 712 Gene3D - 43 264 IPR038718 -
Prci12g1150 712 CDD SF2_C_SNF 338 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1150 Prci-Chr12 17954412 17978647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1150 45 529 RAD5 or RAD16-like Gene Family AT1G02670 25.483 1.10e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1150 SNF2_N 8.9e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1150 K20092 - gmx:100797182 980.704