Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1149 ATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGCGTTGTTACCTTTTAACATCCTATTAACAACTTATGACATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTTCAAAATGCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCTGTGTTGATACTTCGGGAAAGTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGTGCTGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTCGGGGATCTACATCTTATAAAGCTTGAAGATGACCGTGATGAACAAAATATGGATAGAAGTACTCCCGTTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTACGATCTCGCTTCCCCACCTGGAAAGCTGCTTATCAAAAGCCGCATTTTCAGCCAAGCAAAATTCCGCATCAATCCACATGCCCCGTATAGGTTATCAAGATGGATCAGGCCGTTCTGAGTGGTACACCACTGAGCGTCTTCTACGAAAATATGCTTCCCTTCATGGGATCAGGATATATGTGTACCCCTCTCTCTCTCTCTCTCTATATATATATATATATATGTACACACACTTATGCATGTATGCATGTATACTATGGACATTTGGCTATCATATAATTATTTTCAAACATTTTTCTGACAGATACTATTATCGTCGACAATCCCAGTGA 2571 0.4115 MGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNALLPFNILLTTYDIALIDQDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVQNAVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSCVDTSGKWGRGGMFNALNKLSLSIGAAYERASAHGDLHLGDLHLIKLEDDRDEQNMDRSTPVWVALAVVQSYNPRRKVPRSTISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSGRSEWYTTERLLRKYASLHGIRIYVYPSLSLSLYIYIYMYTHLCMYACILWTFGYHIIIFKHFSDRYYYRRQSQ 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1149 856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 473 IPR001650 -
Prci12g1149 856 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Prci12g1149 856 FunFam Putative helicase CHR10 219 530 - -
Prci12g1149 856 Pfam SNF2-related domain 1 281 IPR000330 GO:0005524|GO:0140658
Prci12g1149 856 Gene3D - 1 220 IPR038718 -
Prci12g1149 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 472 IPR027417 -
Prci12g1149 856 SMART helicmild6 331 426 IPR001650 -
Prci12g1149 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Prci12g1149 856 Gene3D Leucine Aminopeptidase, subunit E, domain 1 638 809 IPR043472 -
Prci12g1149 856 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 551 IPR031053 GO:0003678|GO:0006281|GO:0006338
Prci12g1149 856 Gene3D - 221 530 IPR027417 -
Prci12g1149 856 SUPERFAMILY Macro domain-like 642 809 IPR043472 -
Prci12g1149 856 CDD SF2_C_SNF 294 437 - -
Prci12g1149 856 Pfam Helicase conserved C-terminal domain 302 426 IPR001650 -
Prci12g1149 856 CDD Macro_Poa1p-like_SNF2 641 801 - -
Prci12g1149 856 SMART ultradead3 1 171 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1149 Prci-Chr12 17952012 17977873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1149 1 485 RAD5 or RAD16-like Gene Family AT1G02670 25.483 2.82e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1149 SNF2_N 3e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1149 K20092 - gmx:100797182 1175.61