Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1146 ATGAACTATCGACAGAGGCTCCAAGTTGTGGCGAAAGTCGTACTTGAACATGACGCCTGCGACGCCGACGCGCCGCTTCACCCTCAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGGTGAGATTTCATCTATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGCGTTGTTACCTTTTAACATCCTATTAACAACTTATGACATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTTCAAAATGCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCTGTGTTGATACTTCGGGAAAGTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGTGCTGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTCGGGGATCTACATCTTATAAAGCTTGAAGATGACCGTGATGAACAAAATATGGATAGAAGTACTCCCGTTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTACGATCTCGCTTCCCCACCTGGAAAGCTGCTTATCAAAAGCCGCATTTTCAGCCAAGCAAAATTCCGCATCAATCCACATGCCCCGTATAGGTTATCAAGATGGATCAGGCCGTTCTGAGTGGTACACCACTGAGCGTCTTCTACGAAAATATGCTTCCCTTCATGGGATCAGGATATATGTATACTATTATCGTCGACAATCCCAGTGA 2643 0.4253 MNYRQRLQVVAKVVLEHDACDADAPLHPQELGIKATLKPHQVEGVSWLIRRYKLGVNVLLGEISSMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNALLPFNILLTTYDIALIDQDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVQNAVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSCVDTSGKWGRGGMFNALNKLSLSIGAAYERASAHGDLHLGDLHLIKLEDDRDEQNMDRSTPVWVALAVVQSYNPRRKVPRSTISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSGRSEWYTTERLLRKYASLHGIRIYVYYYRRQSQ 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1146 880 CDD SF2_C_SNF 359 502 - -
Prci12g1146 880 Pfam Helicase conserved C-terminal domain 367 491 IPR001650 -
Prci12g1146 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 537 IPR027417 -
Prci12g1146 880 Pfam SNF2-related domain 65 346 IPR000330 GO:0005524|GO:0140658
Prci12g1146 880 SMART helicmild6 396 491 IPR001650 -
Prci12g1146 880 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 29 616 IPR031053 GO:0003678|GO:0006281|GO:0006338
Prci12g1146 880 CDD Macro_Poa1p-like_SNF2 706 866 - -
Prci12g1146 880 Gene3D Leucine Aminopeptidase, subunit E, domain 1 706 880 IPR043472 -
Prci12g1146 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 538 IPR001650 -
Prci12g1146 880 SUPERFAMILY Macro domain-like 707 874 IPR043472 -
Prci12g1146 880 Gene3D - 286 595 IPR027417 -
Prci12g1146 880 SMART ultradead3 33 236 IPR014001 -
Prci12g1146 880 FunFam Putative helicase CHR10 284 595 - -
Prci12g1146 880 Gene3D - 12 285 IPR038718 -
Prci12g1146 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 228 IPR014001 -
Prci12g1146 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1146 Prci-Chr12 17952012 17978647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1146 16 550 RAD5 or RAD16-like Gene Family AT1G02670 25.604 5.96e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1146 SNF2_N 1.5e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1146 K20092 - gmx:100797182 1273.84