Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1145 ATGAACTATCGACAGAGGCTCCAAGTTGTGGCGAAAGTCGTACTTGAACATGACGCCTGCGACGCCGACGCGCCGCTTCACCCTCAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGGGGATGAGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGCGTTGTTACCTTTTAACATCCTATTAACAACTTATGACATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTTCAAAATGCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCTGTGTTGATACTTCGGGAAAGTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGTGCTGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTCGGGGATCTACATCTTATAAAGCTTGAAGATGACCGTGATGAACAAAATATGGATAGAAGTACTCCCGTTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTACGATCTCGCTTCCCCACCTGGAAAGCTGCTTATCAAAAGCCGCATTTTCAGCCAAGCAAAATTCCGCATCAATCCACATGCCCCGTATAGGTTATCAAGATGGATCAGGCCGTTCTGAGTGGTACACCACTGAGCGTCTTCTACGAAAATATGCTTCCCTTCATGGGATCAGGATATATGTGTACCCCTCTCTCTCTCTCTCTCTATATATATATATATATATGTACACACACTTATGCATGTATGCATGTATACTATGGACATTTGGCTATCATATAATTATTTTCAAACATTTTTCTGACAGATACTATTATCGTCGACAATCCCAGTGA 2760 0.421 MNYRQRLQVVAKVVLEHDACDADAPLHPQELGIKATLKPHQVEGVSWLIRRYKLGVNVLLGDEMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNALLPFNILLTTYDIALIDQDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVQNAVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSCVDTSGKWGRGGMFNALNKLSLSIGAAYERASAHGDLHLGDLHLIKLEDDRDEQNMDRSTPVWVALAVVQSYNPRRKVPRSTISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSGRSEWYTTERLLRKYASLHGIRIYVYPSLSLSLYIYIYMYTHLCMYACILWTFGYHIIIFKHFSDRYYYRRQSQ 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1145 919 CDD Macro_Poa1p-like_SNF2 704 864 - -
Prci12g1145 919 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 226 IPR014001 -
Prci12g1145 919 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 536 IPR001650 -
Prci12g1145 919 Pfam Helicase conserved C-terminal domain 365 489 IPR001650 -
Prci12g1145 919 FunFam Putative helicase CHR10 282 593 - -
Prci12g1145 919 SUPERFAMILY Macro domain-like 705 872 IPR043472 -
Prci12g1145 919 CDD SF2_C_SNF 357 500 - -
Prci12g1145 919 Gene3D Leucine Aminopeptidase, subunit E, domain 1 701 872 IPR043472 -
Prci12g1145 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 535 IPR027417 -
Prci12g1145 919 SMART ultradead3 33 234 IPR014001 -
Prci12g1145 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 271 IPR027417 -
Prci12g1145 919 Gene3D - 284 593 IPR027417 -
Prci12g1145 919 SMART helicmild6 394 489 IPR001650 -
Prci12g1145 919 Pfam SNF2-related domain 55 344 IPR000330 GO:0005524|GO:0140658
Prci12g1145 919 Gene3D - 12 283 IPR038718 -
Prci12g1145 919 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 29 871 IPR031053 GO:0003678|GO:0006281|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1145 Prci-Chr12 17952012 17978647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1145 16 548 RAD5 or RAD16-like Gene Family AT1G02670 25.890 1.20e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1145 SNF2_N 5.4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1145 K20092 - gmx:100797182 1269.22