Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1142 ATGACGCCTGCGACGCCGACGCGCCGCTTCACCCTCAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGCGTTGTTACCTTTTAACATCCTATTAACAACTTATGACATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCTGTGTTGATACTTCGGGAAAGTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGTGCTGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTCGGGGATCTACATCTTATAAAGCTTGAAGATGACCGTGATGAACAAAATATGGATAGAAGTACTCCCGTTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTACGATCTCGCTTCCCCACCTGGAAAGCTGCTTATCAAAAGCCGCATTTTCAGCCAAGCAAAATTCCGCATCAATCCACATGCCCCGTATAGGTTATCAAGATGGATCAGGCCGTTCTGAGTGGTACACCACTGAGCGTCTTCTACGAAAATATGCTTCCCTTCATGGGATCAGGATATATGTGTACCCCTCTCTCTCTCTCTCTCTATATATATATATATATATGTACACACACTTATGCATGTATGCATGTATACTATGGACATTTGGCTATCATATAATTATTTTCAAACATTTTTCTGACAGATACTATTATCGTCGACAATCCCAGTGA 2691 0.4199 MTPATPTRRFTLKSLGSRRPLNPTRWREFRGSYEDINLASTFSSMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNALLPFNILLTTYDIALIDQDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSCVDTSGKWGRGGMFNALNKLSLSIGAAYERASAHGDLHLGDLHLIKLEDDRDEQNMDRSTPVWVALAVVQSYNPRRKVPRSTISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSGRSEWYTTERLLRKYASLHGIRIYVYPSLSLSLYIYIYMYTHLCMYACILWTFGYHIIIFKHFSDRYYYRRQSQ 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1142 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 248 IPR027417 -
Prci12g1142 896 Gene3D Leucine Aminopeptidase, subunit E, domain 1 678 849 IPR043472 -
Prci12g1142 896 SMART helicmild6 371 466 IPR001650 -
Prci12g1142 896 FunFam Putative helicase CHR10 259 570 - -
Prci12g1142 896 Gene3D - 43 260 IPR038718 -
Prci12g1142 896 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 44 591 IPR031053 GO:0003678|GO:0006281|GO:0006338
Prci12g1142 896 Pfam SNF2-related domain 44 321 IPR000330 GO:0005524|GO:0140658
Prci12g1142 896 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 513 IPR001650 -
Prci12g1142 896 Gene3D - 261 570 IPR027417 -
Prci12g1142 896 CDD Macro_Poa1p-like_SNF2 681 841 - -
Prci12g1142 896 SMART ultradead3 17 215 IPR014001 -
Prci12g1142 896 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 207 IPR014001 -
Prci12g1142 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 512 IPR027417 -
Prci12g1142 896 Pfam Helicase conserved C-terminal domain 342 466 IPR001650 -
Prci12g1142 896 SUPERFAMILY Macro domain-like 682 849 IPR043472 -
Prci12g1142 896 CDD SF2_C_SNF 334 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1142 Prci-Chr12 17952012 17978647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1142 45 525 RAD5 or RAD16-like Gene Family AT1G02670 25.487 5.43e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1142 SNF2_N 2.7e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1142 K20092 - gmx:100797182 1170.22