Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1141 ATGACGCCTGCGACGCCGACGCGCCGCTTCACCCTCAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGTCAATTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGTGTAACAGATGGATGGGTTTCAGAGATAGTTAAATTTGCCCCCAAACTAAAAGTAATCAAATATGTTGGAGGGAAAGAATACAGATGCAGCCTACGGAGGAATATTCATGAGCATGTAAAGGGACAGTCGACAGCAGTCAATGATTTTCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATACAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGTACACCAATTCAGAACAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACGCTAGAACAGTTCCTTTCGGCATTCAAGGACATCAGTGATCCTGCATCAGTTCAAAATGCAGTGAAGGTAAAGGAGCAACTTAAAATACTGAAATGTATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCCCTCACTGAGATAACTGTTATGGCACCCCTAGTGGGCCTGCAGAAAAAGGTCTACATGTCAATTTTGAGAAAGGAGCTTCCTAAGTTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATACAACTAAGGAAAGCGTGTAGCCATCCTTATCTTTTTCCAGGCATTGAGCCTGAGCCTTATCAAGAGGGTGAACATCTGGTTCAGGCCAGCGGTAAATTGTTGATCCTGGACCAGCTTCTTCAGAAGTTACATTATTATGGACACCATGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTGCGAAAATATTCCTATGTACGTCTCGATGGGTCAGTTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCAGCTTTGAATTCTGAAGCAGACCAAAACGGAGCCTTTGTCTTCTTGATCACGACAAGAGCTGGGGGAGTTGGATTGAATCTTGTGGCTGCTGATACAGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAACAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTCAGTCTCAATGTTATAGGTGATGATATTCAGGAACATGAAGAAGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAATAATGATGGGGAGCTTGGGGACATGAATTTGTCAGTAATTAATGCTATGACTGACAAGGTGATTGCAATGCGTGATGTACATATATCTGACAAGGATGACAGAAAATTTGAGATCAACCCTAGAAATCTTCTAGAATCATATAATGCTAAGGAAGGATCTTCTGTTTCTTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTTGAGGAACTGCCAAAATCAAGTGGTGACTCAATCATGGAGATGAGGAATAGAGGAATCTTGGATGAGGAAAAGCGTCTAAAACTTGAGGTTGCAAAGAAGAAAGCGGAAGAAAAGAAGCTGCGTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGACCCTATCATCACTCCAGATGGTGGTAATACATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGCACAGATCCATTGAACGTCTGTCCATCTGAACCTGCCATAATATTGAGCTGTGTTGATACTTCGGGAAAGTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGTGCTGCCTATGAACGGGCTTCTGCACATGGGGACTTGCATCTCGGGGATCTACATCTTATAAAGCTTGAAGATGACCGTGATGAACAAAATATGGATAGAAGTACTCCCGTTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAAAGTTCCTCGGAGTACGATCTCGCTTCCCCACCTGGAAAGCTGCTTATCAAAAGCCGCATTTTCAGCCAAGCAAAATTCCGCATCAATCCACATGCCCCGTATAGGTTATCAAGATGGATCAGGCCGTTCTGAGTGGTACACCACTGAGCGTCTTCTACGAAAATATGCTTCCCTTCATGGGATCAGGATATATGTGTACCCCTCTCTCTCTCTCTCTCTATATATATATATATATATGTACACACACTTATGCATGTATGCATGTATACTATGGACATTTGGCTATCATATAATTATTTTCAAACATTTTTCTGACAGATACTATTATCGTCGACAATCCCAGTGA 2646 0.4206 MTPATPTRRFTLKSLGSRRPLNPTRWREFRGSYEDINLASTFSSMGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEIVKFAPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSTAVNDFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSAFKDISDPASVQNAVKVKEQLKILKCILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYQEGEHLVQASGKLLILDQLLQKLHYYGHHVLLFAQMTQTLDILQDFLELRKYSYVRLDGSVRAEERFAAIRSFSGPSANSALNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDDIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGELGDMNLSVINAMTDKVIAMRDVHISDKDDRKFEINPRNLLESYNAKEGSSVSFNSDPSLDEASYLSWVKKFEELPKSSGDSIMEMRNRGILDEEKRLKLEVAKKKAEEKKLRKWEALGYHSLNVNDPIITPDGGNTSDAGSVHFVYGDCTDPLNVCPSEPAIILSCVDTSGKWGRGGMFNALNKLSLSIGAAYERASAHGDLHLGDLHLIKLEDDRDEQNMDRSTPVWVALAVVQSYNPRRKVPRSTISLPHLESCLSKAAFSAKQNSASIHMPRIGYQDGSGRSEWYTTERLLRKYASLHGIRIYVYPSLSLSLYIYIYMYTHLCMYACILWTFGYHIIIFKHFSDRYYYRRQSQ 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1141 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 498 IPR001650 -
Prci12g1141 881 CDD SF2_C_SNF 319 462 - -
Prci12g1141 881 Gene3D - 43 245 IPR038718 -
Prci12g1141 881 FunFam Putative helicase CHR10 244 555 - -
Prci12g1141 881 SMART ultradead3 17 196 IPR014001 -
Prci12g1141 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 233 IPR027417 -
Prci12g1141 881 Pfam Helicase conserved C-terminal domain 327 451 IPR001650 -
Prci12g1141 881 CDD Macro_Poa1p-like_SNF2 666 826 - -
Prci12g1141 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 497 IPR027417 -
Prci12g1141 881 Pfam SNF2-related domain 44 306 IPR000330 GO:0005524|GO:0140658
Prci12g1141 881 Gene3D Leucine Aminopeptidase, subunit E, domain 1 663 834 IPR043472 -
Prci12g1141 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 188 IPR014001 -
Prci12g1141 881 SUPERFAMILY Macro domain-like 667 834 IPR043472 -
Prci12g1141 881 Gene3D - 246 555 IPR027417 -
Prci12g1141 881 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 44 576 IPR031053 GO:0003678|GO:0006281|GO:0006338
Prci12g1141 881 SMART helicmild6 356 451 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1141 Prci-Chr12 17952012 17978647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1141 45 510 RAD5 or RAD16-like Gene Family AT1G02670 25.678 1.38e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci12g1141 SNF2_N 7.3e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1141 K20092 - gmx:100797182 1134.78