Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1136 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACAGCTGCAGCTGCTACCGCCAAGAAGTTACCCTTCTTGCCAATATCTGAAGACAAGAAGCTTGATATTGCTGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAAAAGTTAGAATATACTGCGCTTGAGAATAAATTTTCCCAACTAAAGGATAGGCAGCGATCATATGGTTCCATATTAACGGTGGTTAAGAATTCTTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGCTCAAACTGTTGAGTCTAGCAGCAGCAAATTGGATACAAATGTCACATCAGTCACAGTTGGAAATCGATCCACTGTCAAGGATGATCTTCTTAGTCGACTTGAGCAAACGGGTGCAACTGAAAGTTCCTCGACATATAGTTGGGCCAGTCAGATGGAAGAGCAGAGACAAGTTACTGTTGAAAAAGCTAAGAGCGTTATGCAGAATATTGTGGCTGCTGTCAATAACCTTTGGTGTCTGAAAGATGGATTGCATGCTGCAGTGTTAACAAAACTCCCAGGAGATGGCATGCGTGGGCAGAAGTCCTTCATTGATCTAAACATGGAAATTAAAACCTTGAGATCGGCATTTTCTGAGCTTCATTTAAGGCACAAGTCTTTGTCTAGTGAGTTCCGAAGTCATCGAGATGTTGATGCCAAAAATAAAGTTGAACTTAAAAGATTGAAAGGGGAACTGGCAAACACTGTTGCAGAACTAGAAGAAAGTAATCACAAATTGGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGAGCAGTTTTTCCTGTCTTGAATGTTGGAACTAAGCATGCTGCTAGTGATAAGATCAAAGACAAGCAAAAGGATTTGCAAGATATGGAATCTTCTTTGAAGGAGATATTGGACCAAGGATCCTCCAGGCTAATGGAACTGCGAAATCTTCATGAGGAAAGAATAAGAATATTGCAGCAAATTTGTGATTTGCAAAACACAGTGAGGAATTTGAAGTGTATTATGTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAAAAGTCAAAAGTAGAAGTTCTTGAGTATCAGACCTTATTTGAGAAACTACAGGTTGAGAAGGACAGTCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAAAGTGATTTGGTAGACGTTTTTCAAAGGTCTATGTCAGTTGTTGAATCTAAAGTGGCTGATTTAGGGACTGAAATAAAGAAGAAAATTGAGGAGAGAAATGCAATAGAAAATAAACTGCAAGAGGCGTCTAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAAATCCCTGCTTTCTTCATTTCCTGAAGAAATGGGATCTATGCAAAGTAAATTAAGTAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTGCGTGCAGATGTACAGTCTCTCTCTAGTATTCTCGAGAGGAAGATAAAGCAATGTGATGTTTTATCTAGTAAATCTGCTGATCAGCTTGCTGAGATACAGAGGCTGCATGCTGTGGTCCATGATTTGAGAGAAAGTGAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCAGAATACAGAGCATGGGCCCATGTTCGAAGTTTGAAATCTTCTCTTGATGAACACAACTTAGAGCTTCGAGTTAAGACGGCAAATGAGGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAGGCTGAAATAGTGGACTTGAGACAGAAATTTGATGCTTCAAAAAGGGAGAAAGGTAAACTTTCTGATGTCTTGAAATCAAAAAATGAGGAAATTGAAGCCTACTTATCTGAAATAGAGGTTAGACTCTATCATAAAATATCCAATTTGATTTCTTCTTTGGAAGCAAAGACTATTGGGCAAGCATATGATGATATGCAAACTCAAAACCAACATCTGTTGCACCAGATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTGAGGGCAAGACAAAAACAGGAATCTTTCATCATGGAAAAGCAGGCCATTGAACGGGAGATCCAGCAATCAAATGCTTCCCTTAAATTTTATGACATGAAAGCTGCTAGGATTGACGACCAGTTAAAGTTCTGTTCAGATCAGTGTCAGAGACTTGAGGAGGATAAGGTTCAAAGTTCTGTTACTTTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGCCAGAGAAACTGTGGAGGAAGTGCAATCTAAAGTTGGTATTAGTCGTGTAACTTGTATGGAGTTACAAGTAGACATAGAGAGAGAAAGGTTTGCCAGGAAAAGATTAGAGGAGGAGCTGGAGGTTGCCAGGAGAAAGTTTTCTTACCTTCAGGCGCAGATTGAGGGCTCCTCTGTTATTGAAAAGCTTCAACAGGAACTAGGAGAATACAGGGAAATTGTCAAGTGCAGTGTCTGCCAAGACAGGACGAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCATGAAAGTTGTTGACAGTAAGCAACGCAAATGTCCGTTATGTGCTGCAAGCTTTGGGCCCAATGATGTGAAGCCCATTTATTTGTAA 2694 0.4046 MGSMGEPDRKRRHFSSLSPTAAAATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTALENKFSQLKDRQRSYGSILTVVKNSWEQVIDDLVSCSAQTVESSSSKLDTNVTSVTVGNRSTVKDDLLSRLEQTGATESSSTYSWASQMEEQRQVTVEKAKSVMQNIVAAVNNLWCLKDGLHAAVLTKLPGDGMRGQKSFIDLNMEIKTLRSAFSELHLRHKSLSSEFRSHRDVDAKNKVELKRLKGELANTVAELEESNHKLATLKAERDAAKGAVFPVLNVGTKHAASDKIKDKQKDLQDMESSLKEILDQGSSRLMELRNLHEERIRILQQICDLQNTVRNLKCIMSSHAFQLARDQIEKSKVEVLEYQTLFEKLQVEKDSLAWREREWYIKSDLVDVFQRSMSVVESKVADLGTEIKKKIEERNAIENKLQEASREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILERKIKQCDVLSSKSADQLAEIQRLHAVVHDLRESELELKLILEMYRRESIDSRDVVEARDSEYRAWAHVRSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKFDASKREKGKLSDVLKSKNEEIEAYLSEIEVRLYHKISNLISSLEAKTIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESFIMEKQAIEREIQQSNASLKFYDMKAARIDDQLKFCSDQCQRLEEDKVQSSVTLENTQRRLLDVRRSSQQARETVEEVQSKVGISRVTCMELQVDIERERFARKRLEEELEVARRKFSYLQAQIEGSSVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIMKVVDSKQRKCPLCAASFGPNDVKPIYL 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1136 897 ProSitePatterns Zinc finger RING-type signature. 860 869 IPR017907 -
Prci12g1136 897 Coils Coil 418 445 - -
Prci12g1136 897 MobiDBLite consensus disorder prediction 1 15 - -
Prci12g1136 897 Pfam Zinc finger, C3HC4 type (RING finger) 843 885 - -
Prci12g1136 897 Coils Coil 788 822 - -
Prci12g1136 897 Coils Coil 725 773 - -
Prci12g1136 897 PANTHER RING FINGER PROTEIN-RELATED 1 897 IPR013956 GO:0004842|GO:0010390
Prci12g1136 897 CDD RING-HC_Bre1-like 838 895 - -
Prci12g1136 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 897 IPR013083 -
Prci12g1136 897 MobiDBLite consensus disorder prediction 1 21 - -
Prci12g1136 897 Coils Coil 244 281 - -
Prci12g1136 897 Coils Coil 291 318 - -
Prci12g1136 897 SMART ring_2 845 883 IPR001841 -
Prci12g1136 897 Coils Coil 42 76 - -
Prci12g1136 897 SUPERFAMILY RING/U-box 837 896 - -
Prci12g1136 897 ProSiteProfiles Zinc finger RING-type profile. 845 883 IPR001841 -
Prci12g1136 897 Coils Coil 582 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1136 Prci-Chr12 17808854 17843314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1136 825 896 C3H Transcription Factor Family AT3G58030 33.333 3.84e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1136 K10696 - gmx:100790337 1227.62