Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1135 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACAGCTGCAGCTGCTACCGCCAAGAAGTTACCCTTCTTGCCAATATCTGAAGACAAGAAGCTTGATATTGCTGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAAAAGTTAGAATATACTGCGCTTGAGAATAAATTTTCCCAACTAAAGGATAGGCAGCGATCATATGGTTCCATATTAACGGTGGTTAAGAATTCTTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGCTCAAACTGTTGAGTCTAGCAGCAGCAAATTGGATACAAATGTCACATCAGTCACAGTTGGAAATCGATCCACTGTCAAGGATGATCTTCTTAGTCGACTTGAGCAAACGGGTGCAACTGAAAGTTCCTCGACATATAGTTGGGCCAGTCAGATGGAAGAGCAGAGACAAGTTACTGTTGAAAAAGCTAAGAGCGTTATGCAGAATATTGTGGCTGCTGTCAATAACCTTTGGTGTCTGAAAGATGGATTGCATGCTGCAGTGTTAACAAAACTCCCAGGAGATGGCATGCGTGGGCAGAAGTCCTTCATTGATCTAAACATGGAAATTAAAACCTTGAGATCGGCATTTTCTGAGCTTCATTTAAGGCACAAGTCTTTGTCTAGTGAGTTCCGAAGTCATCGAGATGTTGATGCCAAAAATAAAGTTGAACTTAAAAGATTGAAAGGGGAACTGGCAAACACTGTTGCAGAACTAGAAGAAAGTAATCACAAATTGGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGAGCAGTTTTTCCTGTCTTGAATGTTGGAACTAAGCATGCTGCTAGTGATAAGATCAAAGACAAGCAAAAGGATTTGCAAGATATGGAATCTTCTTTGAAGGAGATATTGGACCAAGGATCCTCCAGGCTAATGGAACTGCGAAATCTTCATGAGGAAAGAATAAGAATATTGCAGCAAATTTGTGATTTGCAAAACACAGTGAGGAATTTGAAGTGTATTATGTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAAAAGTCAAAAGTAGAAGTTCTTGAGTATCAGACCTTATTTGAGAAACTACAGGTTGAGAAGGACAGTCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAAAGTGATTTGGTAGACGTTTTTCAAAGGTCTATGTCAGTTGTTGAATCTAAAGTGGCTGATTTAGGGACTGAAATAAAGAAGAAAATTGAGGAGAGAAATGCAATAGAAAATAAACTGCAAGAGGCGTCTAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAAATCCCTGCTTTCTTCATTTCCTGAAGAAATGGGATCTATGCAAAGTAAATTAAGTAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTGCGTGCAGATGTACAGTCTCTCTCTAGTATTCTCGAGAGGAAGATAAAGCAATGTGATGTTTTATCTAGTAAATCTGCTGATCAGCTTGCTGAGATACAGAGGCTGCATGCTGTGGTCCATGATTTGAGAGAAAGTGAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCAGAATACAGAGCATGGGCCCATGTTCGAAGTTTGAAATCTTCTCTTGATGAACACAACTTAGAGCTTCGAGTTAAGACGGCAAATGAGGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAGGCTGAAATAGTGGACTTGAGACAGAAATTTGATGCTTCAAAAAGGGAGAAAGGTAAACTTTCTGATGTCTTGAAATCAAAAAATGAGGAAATTGAAGCCTACTTATCTGAAATAGAGACTATTGGGCAAGCATATGATGATATGCAAACTCAAAACCAACATCTGTTGCACCAGATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTGAGGGCAAGACAAAAACAGGAATCTTTCATCATGGAAAAGCAGGCCATTGAACGGGAGATCCAGCAATCAAATGCTTCCCTTAAATTTTATGACATGAAAGCTGCTAGGATTGACGACCAGTTAAAGTTCTGTTCAGATCAGTGTCAGAGACTTGAGGAGGATAAGGTTCAAAGTTCTGTTACTTTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGCCAGAGAAACTGTGGAGGAAGTGCAATCTAAAGTTGGTATTAGTCGTGTAACTTGTATGGAGTTACAAGTAGACATAGAGAGAGAAAGGTTTGCCAGGAAAAGATTAGAGGAGGAGCTGGAGGTTGCCAGGAGAAAGTTTTCTTACCTTCAGGCGCAGATTGAGGGCTCCTCTGTTATTGAAAAGCTTCAACAGGAACTAGGAGAATACAGGGAAATTGTCAAGTGCAGTGTCTGCCAAGACAGGACGAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCATGAAAGTTGTTGACAGTAAGCAACGCAAATGTCCGTTATGTGCTGCAAGCTTTGGGCCCAATGATGTGAAGCCCATTTATTTGTAA 2643 0.4067 MGSMGEPDRKRRHFSSLSPTAAAATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTALENKFSQLKDRQRSYGSILTVVKNSWEQVIDDLVSCSAQTVESSSSKLDTNVTSVTVGNRSTVKDDLLSRLEQTGATESSSTYSWASQMEEQRQVTVEKAKSVMQNIVAAVNNLWCLKDGLHAAVLTKLPGDGMRGQKSFIDLNMEIKTLRSAFSELHLRHKSLSSEFRSHRDVDAKNKVELKRLKGELANTVAELEESNHKLATLKAERDAAKGAVFPVLNVGTKHAASDKIKDKQKDLQDMESSLKEILDQGSSRLMELRNLHEERIRILQQICDLQNTVRNLKCIMSSHAFQLARDQIEKSKVEVLEYQTLFEKLQVEKDSLAWREREWYIKSDLVDVFQRSMSVVESKVADLGTEIKKKIEERNAIENKLQEASREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILERKIKQCDVLSSKSADQLAEIQRLHAVVHDLRESELELKLILEMYRRESIDSRDVVEARDSEYRAWAHVRSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKFDASKREKGKLSDVLKSKNEEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESFIMEKQAIEREIQQSNASLKFYDMKAARIDDQLKFCSDQCQRLEEDKVQSSVTLENTQRRLLDVRRSSQQARETVEEVQSKVGISRVTCMELQVDIERERFARKRLEEELEVARRKFSYLQAQIEGSSVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIMKVVDSKQRKCPLCAASFGPNDVKPIYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1135 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Prci12g1135 880 Coils Coil 418 445 - -
Prci12g1135 880 MobiDBLite consensus disorder prediction 1 15 - -
Prci12g1135 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Prci12g1135 880 SUPERFAMILY RING/U-box 820 879 - -
Prci12g1135 880 SMART ring_2 828 866 IPR001841 -
Prci12g1135 880 Coils Coil 771 805 - -
Prci12g1135 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Prci12g1135 880 Coils Coil 708 756 - -
Prci12g1135 880 MobiDBLite consensus disorder prediction 1 21 - -
Prci12g1135 880 Coils Coil 291 318 - -
Prci12g1135 880 Coils Coil 244 281 - -
Prci12g1135 880 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
Prci12g1135 880 Coils Coil 42 76 - -
Prci12g1135 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Prci12g1135 880 CDD RING-HC_Bre1-like 821 878 - -
Prci12g1135 880 Coils Coil 582 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1135 Prci-Chr12 17808854 17843314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1135 808 879 C3H Transcription Factor Family AT3G58030 33.333 3.81e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1135 K10696 - gmx:100790337 1238.4