Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci12g1063 | ATGGATAATTATGGGTCTTCATCGCCACATCGTTATCCAAGCTCCTATGGATACCATAGTAGTCCTCCTCCTCCTTATCCGCCTCCTGCTTCAGATCCAATGGTTCCTCCTCCATACCCCTATGCATTCAGTCATTCACAGTCCTTTAACTATTCCTATCCCCCACCTCCTCCACCATTTGACAATAGCCATTACCCTCCACCACCGGCCTATGACCATACCCCTCCGCCCTCAGATTATAGCCATACTAGTCCACCAGCTGACTTTAATTATCCCCCTCCACCACCCTATTCTGCTCCTCACCTTTATCCTTATTCATACCCCATTCCTTCAGGGATTCATAATCCCCCTCAGCCTGCCCACCATAATAGTTTTCAGTATGGATCATCTCATTATCCTCCCCAACAAACTGAGGCAGGTCCATATCCCCAAAGTCAACCTCTGGCCCATTCACGAGCAAATAGCTTCTCCGGTTCCCCCCAGCACGAGAAAATGAGCTCTGCTGGAGACATGTCATTGCAAACTAGTCATAGTTTCAAGCCTTCTCGGACTTCTGCATACCCACCATTGGATGATCTTATGGGCAAAGTTAGCTTGTCTGATAACCAGCCAACTGCTCCTGCAGCCCCTGCTCCTTTGGGGCAGCACCTAGCACATTCAATTACAGTTCCACACCAAGAAAAGCGAGAGGAATTTTACAGTTATCTTAATAACTCCTCTGGATGGGAGTCTTCCTACTCTGGTCGGGTCGATTCATCTAAGCTTTCATCTTATTCAGGCTCATTTAATGATTCAATACATAGTCAGAGTTTGCAGATTGTTCCATCACAGAGTAAGGGGTCGTTGAAAGTGTTGCTTCTACATGGAAATTTAGATATATGGGTCCATGAAGCCAAAAATCTTCCAAATATGGACATGTTCCACAAAACTTTAGGGGATGTGTTTGGTAGATTACCGGTAAATATGAGTAACAAAATTGAGGGAACTATGAGTAAGAAGATTACAAGTGATCCTTATGTAACAATTTCAATATCAAATGCTGTAATTGCGAGGACTTTTGTGATTAGCAACAATGAGAATCCTGTTTGGACGCAGCATTTCCATGTTCCTGTTGCACATAATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTGGTAGGTTCACAGCTCATTGGCATTGTATCAATTCCCGTGGAACAAATATACTCAGGGGGGAAAATAGAAGGGACCTATCCAGTGATGAATAATGGGAAGCCTTGTAAGCCAGGTGCTGTCTTGAGGTTATCCATTCAGTACATTCCAATTGAGAAACTGAGCATTTATCACCAAGGAGTTGGTGCTGGACCAGAGTACATTGGAGTTCCTGGAACTTATTTTCCTCTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCCCATGTCCCAGATGGCTGCCTTCCTAATGTGATACTTGACCAAGGGATGTATTATGCACATGGAAAATGTTGGCATGACATCTTTGATGCCATACGTCAAGCCCGGCGTTTGATTTATATTACAGGGTGGTCAGTATGGCACAAAGTTCTGTTGGTAAGGGATGTTGGCAATCCATCAGGTTATGCACTGGGTGAGCTTCTAAGGTCCAAGTCACAGGAAGGAGTTAGAGTGCTTCTCCTTATTTGGGATGATCCTACGTCCAGGAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAAGAAACTCGACGATTTTTCAAACACTCTTCTGTAAAAGTGCTGCTTTGTCCACGGATTGCAGGAAAACGACACAGCTGGGTGAAGCAAAGGGAAACCAGTACTATATATACGCATCACCAGAAAACTGTAATTGTCGATGCTGATGCTGGAAATAATAGTAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATACGATACTCCCCACCATCCTCTCTTTAGAACACTCCAGACACTGCACAAGGATGACTATCATAACCCTACCTTCACGGGTAATGTTGGAGGTTGTCCAAGGGAGCCATGGCATGACTTGCATTCTAGAATTGATGGTCCAGCAGCATATGATGTTCTGACCAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCATGGGATACAAAAGTTGAAAGGTTCATATGATGATGCTTTGCTTAGGCTGGAAAGAATCCCAGACATTATTGGGATGTCTGATGCTCGTAATTCTAATGAAAATGACCCTGAAGGTTGGCATGTTCAGATATTTCGATCAATTGATTCAAATTCAGTAAAGGGTTTTCCAAAGGATCCAAAAGATGCGACAAGCAAGAACTTAGTTTGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATCCGTGCTGCACAGCATTACATATATATAGAGAATCAATATTTCATTGGGTCTTCTTACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTGATTCCAATGGAAATTGCCCTAAAGATTGCTGAAAAGATCAAGGCCAATGAACGATTTGCTGTGTATATTGTTATTCCAATGTGGCCTGAGGGTGTTCCCACTGGTGCTGCCACACAAAGGATTCTGTTTTGGCAGCATAAAACAATGCAAATGATGTACGAGACAATTTACACGGCTTTAGTTGAGGCTGGGCTTGAGGAGGCATTCTCACCAGAAGACTACTTGAACTTTTTCTGTCTTGGCAACCGGGAGGTCAATGATACATATGGTAACAATGCAACGCCTGGAAATCCTCCTCCTGCAAATAGTCCACAGGCACTAAGTCAAAGTAGCCGACGTTTCATGATTTATGTTCATTCGAAAGGCATGATAGTTGATGATGAGTATGTGATATTGGGATCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCTTACCAACCTCATTATACTTGGGCAAGAAGACATTCTTATCCACGTGGACAGATCCATGGATATAGGATGTCGCTCTGGGCAGAACACACAGGAACAATTGAAAACTGCTTCTTGCAACCAGAGAGCCTTGAATGCGTCAGAAGAGTAAGAGTGATGGGTGAAATGAACTGGAAACGATTTGCGGCACCCGAAGTAACAGATATGAAAGGGCACCTATTGAAATACCCAGTTGAAGTTGATCGAAAGGGAAAGGTCAGATCTCTCCCTGGCCATGAAAACTTCCCTGATGTTGGAGGCAAAGTAACAGGGTCATTTCTTGCCATTCAGGAGAATCTTACCATTTAA | 3309 | 0.434 | MDNYGSSSPHRYPSSYGYHSSPPPPYPPPASDPMVPPPYPYAFSHSQSFNYSYPPPPPPFDNSHYPPPPAYDHTPPPSDYSHTSPPADFNYPPPPPYSAPHLYPYSYPIPSGIHNPPQPAHHNSFQYGSSHYPPQQTEAGPYPQSQPLAHSRANSFSGSPQHEKMSSAGDMSLQTSHSFKPSRTSAYPPLDDLMGKVSLSDNQPTAPAAXPAPLGQHLAHSITVPHQEKREEFYSYLNNSSGWESSYSGRVDSSKLSSYSGSFNDSIHSQSLQIVPSQSKGSLKVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDVFGRLPVNMSNKIEGTMSKKITSDPYVTISISNAVIARTFVISNNENPVWTQHFHVPVAHNAAEVHFVVKDSDVVGSQLIGIVSIPVEQIYSGGKIEGTYPVMNNGKPCKPGAVLRLSIQYIPIEKLSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGCLPNVILDQGMYYAHGKCWHDIFDAIRQARRLIYITGWSVWHKVLLVRDVGNPSGYALGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVKVLLCPRIAGKRHSWVKQRETSTIYTHHQKTVIVDADAGNNSRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNVGGCPREPWHDLHSRIDGPAAYDVLTNFEERWLKASKPHGIQKLKGSYDDALLRLERIPDIIGMSDARNSNENDPEGWHVQIFRSIDSNSVKGFPKDPKDATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYTALVEAGLEEAFSPEDYLNFFCLGNREVNDTYGNNATPGNPPPANSPQALSQSSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHYTWARRHSYPRGQIHGYRMSLWAEHTGTIENCFLQPESLECVRRVRVMGEMNWKRFAAPEVTDMKGHLLKYPVEVDRKGKVRSLPGHENFPDVGGKVTGSFLAIQENLTI | 1103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci12g1063 | 1103 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Prci12g1063 | 1103 | MobiDBLite | consensus disorder prediction | 18 | 40 | - | - | |
| Prci12g1063 | 1103 | Gene3D | Endonuclease Chain A | 754 | 1002 | - | - | |
| Prci12g1063 | 1103 | Gene3D | Endonuclease Chain A | 490 | 728 | - | - | |
| Prci12g1063 | 1103 | PANTHER | PHOSPHOLIPASE D | 282 | 1094 | IPR015679 | - | |
| Prci12g1063 | 1103 | MobiDBLite | consensus disorder prediction | 51 | 103 | - | - | |
| Prci12g1063 | 1103 | FunFam | Phospholipase D | 762 | 995 | - | - | |
| Prci12g1063 | 1103 | FunFam | Phospholipase D delta | 490 | 728 | - | - | |
| Prci12g1063 | 1103 | CDD | C2_plant_PLD | 284 | 436 | - | - | |
| Prci12g1063 | 1103 | FunFam | Phospholipase D delta | 285 | 431 | - | - | |
| Prci12g1063 | 1103 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 949 | 976 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | Pfam | C2 domain | 290 | 416 | IPR000008 | - | |
| Prci12g1063 | 1103 | SUPERFAMILY | Phospholipase D/nuclease | 499 | 713 | - | - | |
| Prci12g1063 | 1103 | SMART | pld_4 | 949 | 976 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | SMART | pld_4 | 614 | 649 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | SMART | C2_3c | 291 | 413 | IPR000008 | - | |
| Prci12g1063 | 1103 | Pfam | Phospholipase D C terminal | 1023 | 1093 | IPR024632 | - | |
| Prci12g1063 | 1103 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 614 | 649 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | SUPERFAMILY | Phospholipase D/nuclease | 781 | 1035 | - | - | |
| Prci12g1063 | 1103 | MobiDBLite | consensus disorder prediction | 117 | 183 | - | - | |
| Prci12g1063 | 1103 | Pfam | Phospholipase D Active site motif | 950 | 976 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | Pfam | Phospholipase D Active site motif | 615 | 649 | IPR001736 | GO:0003824 | |
| Prci12g1063 | 1103 | ProSiteProfiles | C2 domain profile. | 268 | 414 | IPR000008 | - | |
| Prci12g1063 | 1103 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
| Prci12g1063 | 1103 | Gene3D | C2 domain | 285 | 424 | IPR035892 | - | |
| Prci12g1063 | 1103 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 288 | 438 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci12g1063 | Prci-Chr12 | 15396746 | 15415760 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci12g1063 | 59 | 1103 | Phospholipase D Gene Family (Wang group) | AT2G42010 | 69.553 | 0.0 | 1471 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci12g1063 | K01115 | - | gmx:100791059 | 1688.32 |