Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0982 ATGTGTGCTTCTGTACTCCCACAGCAAACTCGTCAGCTTCTGAAAATGATTCCTAACAATTATTCTGCTTTTGAATCGCCATTTCTTCAGCAACACAATGATCCTTCCTCTGCGTCTCTCATGAATAATAATAATAATTCCTTCTTCAAGACCACCTCTACTTCTAACCCTATCGGCGACGTCACCGCTTCGCCGGAACATGGCGTTCGTTGTAACTCCGGCGGTACTGTGTTTTCCAGTGAACGGCATGAAAACACCATGAAACCAGGTGGTAGTGATGGGGCTGATGTTAACACTGCTGCAGATCAGTCTGTGGCACGTGAAGGGAACGCGCCGCCTAGATGGAGGAGTTACAGAGGCGTGAGGCGTCGGCCATGGGGGAAGTTTGCTGCGGAGATCCGGGACCCAGCGAGGAACGGCGCGAGAACGTGGTTAGGGACTTACGAGAGGGAAGAGGATGCAGCTTTGGCTTATGACAAAGCCGCTTTCAAGATGAAGGGTAGAAAAGCAAAGCTCAATTTTCCTCACCTCATTGGGTCGGAACCACCACCGCGGGAGCCGACAAGAGTAGTCGCCCACCAGAAGCGGCGACACTCGTCGGAACCGTCATCATGGTCGCCAGAGAAGGATGATGATGGATCTCAAGGGTCAAGTAAGAAGAAGAGCCTGGTTGGTCTGTTGAATAAGTTGGCAACCAATAGAAGCCACGTTAGAAGCTTGAAATGA 726 0.5069 MCASVLPQQTRQLLKMIPNNYSAFESPFLQQHNDPSSASLMNNNNNSFFKTTSTSNPIGDVTASPEHGVRCNSGGTVFSSERHENTMKPGGSDGADVNTAADQSVAREGNAPPRWRSYRGVRRRPWGKFAAEIRDPARNGARTWLGTYEREEDAALAYDKAAFKMKGRKAKLNFPHLIGSEPPPREPTRVVAHQKRRHSSEPSSWSPEKDDDGSQGSSKKKSLVGLLNKLATNRSHVRSLK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0982 241 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Prci12g0982 241 PANTHER DNA-BINDING DOMAIN 62 214 IPR044808 GO:0003700|GO:0009873
Prci12g0982 241 MobiDBLite consensus disorder prediction 76 96 - -
Prci12g0982 241 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 PRINTS Ethylene responsive element binding protein signature 157 177 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Prci12g0982 241 MobiDBLite consensus disorder prediction 174 241 - -
Prci12g0982 241 CDD AP2 118 177 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 MobiDBLite consensus disorder prediction 218 241 - -
Prci12g0982 241 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Prci12g0982 241 FunFam Ethylene-responsive transcription factor 2 116 176 - -
Prci12g0982 241 MobiDBLite consensus disorder prediction 188 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0982 Prci-Chr12 12683589 12684314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0982 118 203 AP2-EREBP Transcription Factor Family AT2G44840 70.930 9.51e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci12g0982 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0982 K09286 - pcin:129296372 183.726