Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0920 ATGAGCCCTAATCGTTCTCCTTTTGAATCAGTTCAGCATTACCTGATTGAAGATGATCCTTGTTCCTTCATGACTCTCATGAATGGCTCCTTCACGGCCGCCGGCAACCCTACTTCCAACTTGAACTGCGACATGGCTTCGCCGGATCAGGGTGCTACTAGCTCCAGTGTTACGGTGTTTCCTGGTGAGAATAACCACACTGTGAAACCAGGTGGTGATAATTGCGTTAATGGAAATGATGCAGGAACCGTGGCGCGTGAGCAGAACGCGCCACCTAGATGGAGGAATTACCGAGGCGTGAGGCGTCGGCCGTGGGGGAAGTTCACAGCGGAGATCCGGGACCCAAAGAGGAACGGCTCAAGGACATGGCTCGGAACCTATGAGAGCGAGGAGGACGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGCATGGCAGAAAAGCCAAGCTCAATTTCCCACACCTTATTGGATCCGAGCCACCGCCGGAGCCGGCAAGAGTAGTCATTAGAGAGAAGCGGCGCAGCTCGCCGGAACCTTCGTTGCCGTCGAACTGTACATCTGAGGATGATGGATCTCAAGGATCAAGCAAGAAGAAAAGCCTGGCCGGTCTATTGAACAAGTTGGCAACAAATAGAAGCCACGTCAGATTCTTTTGA 660 0.5212 MSPNRSPFESVQHYLIEDDPCSFMTLMNGSFTAAGNPTSNLNCDMASPDQGATSSSVTVFPGENNHTVKPGGDNCVNGNDAGTVAREQNAPPRWRNYRGVRRRPWGKFTAEIRDPKRNGSRTWLGTYESEEDAALAYDRAAFKMHGRKAKLNFPHLIGSEPPPEPARVVIREKRRSSPEPSLPSNCTSEDDGSQGSSKKKSLAGLLNKLATNRSHVRFF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0920 219 Pfam AP2 domain 96 146 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 MobiDBLite consensus disorder prediction 170 200 - -
Prci12g0920 219 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Prci12g0920 219 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Prci12g0920 219 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 PRINTS Ethylene responsive element binding protein signature 136 156 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 FunFam Ethylene-responsive transcription factor 2 95 155 - -
Prci12g0920 219 MobiDBLite consensus disorder prediction 179 200 - -
Prci12g0920 219 CDD AP2 96 156 IPR001471 GO:0003700|GO:0006355
Prci12g0920 219 PANTHER DNA-BINDING DOMAIN 66 194 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0920 Prci-Chr12 11362447 11363156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0920 96 189 AP2-EREBP Transcription Factor Family AT2G44840 69.149 1.45e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g0920 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0920 K09286 - pcin:129296372 225.328