Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0870 ATGCTGGCTCGGACCAGTGATGAAGCAGAGGGCAACGACAGAGAAAGAAAAATGCAGCTACTTACCAACTACAATGGACAAACGAAGATGAAGAAGAGTGCAGCAGTGAGGACGACACAGACCGATGGTGAGGAACGAGGAAACATGACTGAGAAGGAGGAGGAAGAAGAGTTCGACAGTGAAGAAGGAAGAAGAGCACAACATCGCCAGTCCATTGTTTTGAACATTAATTGGATCGTACCAATGATTGATTTTCGATCCAACCGGCCGACTCCATTGTCTTCATCCTCCAAAGCCTCTCCTTGCTCCTCTCGCTTCCACCACCGCCATGTCCATCTCAACCACCACCAACACACCACCACCACTTCTTCTCAGATCCTTCAACACACCTCCGCCTTCATCTCCGACGTCCTCTTGCATTCCCAGCTCCGACGCCGCCTCATTTCCACCCTCCTTCGTGAGTCTCAAATCTCCAGCCAAATCACCCTCAAACACCTCAATTTCGCCGCCGATACTCTCGATAATGGTATCTCTGTCTCCAATCCCGCCATTCGATCCTCCTCCCTCAACCTCGCCGAGAAGCTCCTCCTTCCTCTACCTCAAAACCCGGTTTCCTCTTTCCTTCTCTCTCTCATATACATGATCAACAAGCGCCAACTTGAAGCCGCCTTAAGTCTTCTTCAAACCTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAAAGAGCGAGAATACTGCCATCTACATCAGAAAATTCAGCGCGCTACCCAGACGATTATTCAATTTCGGATGAATATGTCGTCTTGCCCTCCACGAAATCTTTGTCGCAGATGAGCAATGATCAAGCTTCAAAGCTAAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGATAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAATAACGGGGACTCGTCAACCAGTCCGCCATTGTCGGTTCTGAAGAGCGATAGAGAAGATGCAGAAGTCGAGCATAGCCAAGGGGAGACAGCGGAAACAAGTGTGCCTTTGTTTAAGAACGGACGGTATAATCAGCCAATATGGACCGAAACGGCACTCTCGAGTAGCAGTTTCAGCGCCAAGTGGTTGAATGCACCATTTTATCCTCAAAGAGTCTCTCCTAAAATTCTCAAACACCAAGAATCTTCTAAAAATCTGTCCTTACCATCCCATTCAGACATAGACGCTGGAACTGAGCCTTCGGTGGATGAAAATATGCCTTGCTATTCGTCAGAATCTGAAGCAGAAACTGAGGAAAAAGACAACATGATGGTATCACTGAAGCCTCGACGAAGCCAAATCCAAGAATCAGAACCTGGACGTTCCCCAGATTATGCCATGGCAGATTATGATCACCAGCCGCATAGAAACGAAAAATGTATGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTCTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCCATCGAAGAGTGGTTTAACAGGGGGAACTCAACCTGTCCAATCACTCGCCAGAAGCTGCAAAATACCCAACTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGACAGTCTACATGCTGAAACTGAAGTAGAAATCAAGTCAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAGGCCAATGTTGATGGGATGATTCGTGAGTTACGACATGCAATCAACAAGCTGTATATGTCAGAGGTCCTCGAGGAGTCTGAGATGGCTGTGCTTCAAATTGAGCAATTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAAAGCATGCTATCCAAACCTCCAATCATTAATGGGTTTATGGAAATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGTAACAGTTTTTCTTCTGGCTGAGATGGGTACTAGAGACAATGCTGTTATTCAGACTCTTACCCAAGTGGACTCTGATGTAGAATGTATTATGGCACTTTTCAAGAAAGGCTTGACCGAGGCTGTTGTACTAATATATCTTCTGAAACCTCCTACTACGACTCTTGCAGAAATGGCCATGCTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCAAAGTCAGCTGTGGTACTTTTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAACTAATAGAGTAATTGGATATATAATTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGCAGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCACGTCATTGCTGAAAGAGTTGAGCTCTCTCCCATTTTGGAAAGCTTCGTTGGGGCGAATGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACCTTCCTCGTTTATATGCAGACAGCCCTTCAAGACCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGTCTATAGATACTCTTATTTCATGCCTCAGGAACACTGATTTCCCGGCTGCCCAAGTAATAGCTGCTGAGACAATAGTGTCATTGCAAGGAAGATTCAACTTCAGTGGGAAGCCTCTTACTAGAGAAGTCCTTCTTAAACGTGCAGGCGTTAATGGAAATTATAGAAATCTTGATCAGATGGATCATATCAGCGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAATTGCGTCCGTTTTAGTTAGCCATGAGTTTGGCCTCCTTTTCGAGGCTTTCGCTGAAGGCGTGAAAAGTCGAAGAACGCGAGGAGCAGCCTGTGTCTGCATGCTCAAGCACTTTGTATCTATATTAAAATCTTCTAAGGACACAGAAGATAGAGTCCTTTCTATGCTTGCTTTAAACAGCTTTCTTCAATACCCTGACGCATTGCTTGATCTTTCTTCCTACACTAAGGATGTCCTAAAAGGTCTAAGAGAGCTAAAGAGATTCTCCCCCCTTGCATCTGAAATGCTCAAATTTTTGGTTGAAGAGAATGAATCTAAAGCAGGCATCTGGATGCATAAGGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCACAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGACAGTGAGGGGGAGCTTATTCCATCTGATACAAGAGACGCAAGAACACACGAAGGCTGTTTCAAGTTTGTCAATTTTAGAATCTATTGACAGACTGTACAGTGGTTCACTTGATCGATCTGTTAAGGTCTGGTCTATCGGAAAGTCAGCAATACAATGCGTACAAGTGCATGACATGAAAGATCATATTCATAATTTAGCTGTAACCAACAACAAATTTTGCTACATTCCTCAGGGAAATGGTGTCAAGGTTCAATCATTGCATGGAGAACTGAGGCTGTTAAACAGTAACAAATACATCAGATGCTTGGCTCTTGCTCAAGAGAGACTATACTGTGGATGTCACGACAACAGTATTCAGGAGATTGATTTGGAAAAAGGAACTGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAGATACATGGCGAACATATATATGCAGCCAGTTCTACTCTGGATGGAGTTGCTATAAAGATATGGAAAAAGTCCAATTATAGCATGATTGGATCACTTGTAACTGCTTCAGAAGTGAGGACGATGGCATTGAGCTCAGAATTAATTTACTTAGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACATAACAGAATTGATACATTACAGATTGGTACGAATGGTAAGATCACTTGCATGGCTATCGACGACAATGAAGAAATTTTGGCGATTGGAACATCTGATGGCCGAATTCAGGCGTGGGGAATAAACTAA 4242 0.434 MLARTSDEAEGNDRERKMQLLTNYNGQTKMKKSAAVRTTQTDGEERGNMTEKEEEEEFDSEEGRRAQHRQSIVLNINWIVPMIDFRSNRPTPLSSSSKASPCSSRFHHRHVHLNHHQHTTTTSSQILQHTSAFISDVLLHSQLRRRLISTLLRESQISSQITLKHLNFAADTLDNGISVSNPAIRSSSLNLAEKLLLPLPQNPVSSFLLSLIYMINKRQLEAALSLLQTFYLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRARILPSTSENSARYPDDYSISDEYVVLPSTKSLSQMSNDQASKLRELERDYEEAIDDNCRIIAEYFKEVLVNNNGDSSTSPPLSVLKSDREDAEVEHSQGETAETSVPLFKNGRYNQPIWTETALSSSSFSAKWLNAPFYPQRVSPKILKHQESSKNLSLPSHSDIDAGTEPSVDENMPCYSSESEAETEEKDNMMVSLKPRRSQIQESEPGRSPDYAMADYDHQPHRNEKCMPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSDSLHAETEVEIKSTMPSTSPNSVITQANVDGMIRELRHAINKLYMSEVLEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQVTVFLLAEMGTRDNAVIQTLTQVDSDVECIMALFKKGLTEAVVLIYLLKPPTTTLAEMAMLESLITVFDKKEEDLLKMCIKPKSAVVLLLARILGSNEERIASSVAKTLITNRVIGYIIGSFRAEWAEERIAAAEILLRCIQEDGTCRHVIAERVELSPILESFVGANDAERFKIIQFFSELVKLNRRTFNEQILHIIKEEGSFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREESIDTLISCLRNTDFPAAQVIAAETIVSLQGRFNFSGKPLTREVLLKRAGVNGNYRNLDQMDHISGELEMNPEEEKAADDWERKIASVLVSHEFGLLFEAFAEGVKSRRTRGAACVCMLKHFVSILKSSKDTEDRVLSMLALNSFLQYPDALLDLSSYTKDVLKGLRELKRFSPLASEMLKFLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVRGSLFHLIQETQEHTKAVSSLSILESIDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDHIHNLAVTNNKFCYIPQGNGVKVQSLHGELRLLNSNKYIRCLALAQERLYCGCHDNSIQEIDLEKGTVNTIQSGSKRLLGKANPVYALQIHGEHIYAASSTLDGVAIKIWKKSNYSMIGSLVTASEVRTMALSSELIYLGCKGGAVEIWDRKKHNRIDTLQIGTNGKITCMAIDDNEEILAIGTSDGRIQAWGIN 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0870 1413 Coils Coil 302 322 - -
Prci12g0870 1413 SUPERFAMILY ARM repeat 616 1113 IPR016024 -
Prci12g0870 1413 MobiDBLite consensus disorder prediction 417 486 - -
Prci12g0870 1413 MobiDBLite consensus disorder prediction 1 17 - -
Prci12g0870 1413 SUPERFAMILY RING/U-box 495 576 - -
Prci12g0870 1413 MobiDBLite consensus disorder prediction 1 66 - -
Prci12g0870 1413 ProSiteProfiles U-box domain profile. 498 573 IPR003613 GO:0004842|GO:0016567
Prci12g0870 1413 SUPERFAMILY ARM repeat 123 697 IPR016024 -
Prci12g0870 1413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1170 1203 - -
Prci12g0870 1413 Gene3D - 1113 1413 IPR015943 GO:0005515
Prci12g0870 1413 SMART WD40_4 1237 1280 IPR001680 GO:0005515
Prci12g0870 1413 SMART WD40_4 1293 1329 IPR001680 GO:0005515
Prci12g0870 1413 SMART WD40_4 1371 1411 IPR001680 GO:0005515
Prci12g0870 1413 SMART WD40_4 1163 1202 IPR001680 GO:0005515
Prci12g0870 1413 SMART WD40_4 1121 1158 IPR001680 GO:0005515
Prci12g0870 1413 SMART WD40_4 1332 1368 IPR001680 GO:0005515
Prci12g0870 1413 ProSiteProfiles Trp-Asp (WD) repeats profile. 1379 1413 IPR001680 GO:0005515
Prci12g0870 1413 MobiDBLite consensus disorder prediction 417 431 - -
Prci12g0870 1413 Pfam U-box domain 500 570 IPR003613 GO:0004842|GO:0016567
Prci12g0870 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 576 IPR013083 -
Prci12g0870 1413 MobiDBLite consensus disorder prediction 18 43 - -
Prci12g0870 1413 MobiDBLite consensus disorder prediction 341 374 - -
Prci12g0870 1413 SUPERFAMILY WD40 repeat-like 1141 1412 IPR036322 GO:0005515
Prci12g0870 1413 CDD RING-Ubox_PUB 500 552 IPR045210 -
Prci12g0870 1413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1036 1412 - -
Prci12g0870 1413 ProSiteProfiles Trp-Asp (WD) repeats profile. 1170 1203 IPR001680 GO:0005515
Prci12g0870 1413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1379 1413 - -
Prci12g0870 1413 SMART Ubox_2 502 566 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0870 Prci-Chr12 9768656 9783712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0870 498 579 U-box Gene Family AT1G67530 51.220 1.75e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0870 - - pcin:129289069 2676.35