Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0837 ATGAATTCTCCTCCGCCTTATACCCTAAACGTCGTCGGATCAGACCCAAACACCTTCGCCGACACGGCTTCGATTGCTGAAGATCATGCCGACTCTCAACACTTCTCTTCGGCTTTTCAGAACGTCAACACCAGCGTTCTCATTATCGTCATCATCCTCGCCATTACTGTCATTGTGTCGCTCTCTCTCTGCTTGCTCCTTCGTCACCTCAATCTCCGGTGCCTTCGTCGGCTGTCTCCGTCGTCTTTGTCGTTGTCATCCAGGAGGAATGCCATGCCGGCAAGTGCCACTGCTACTACCACTCCTGTTTTCTCTTCCAGCCGTCGCGTCTCGCCGGAGATTCCTTCGGCTTCCATCATTGACTCACTCCCTCTGTTCACGTTTTCTTCTATTAGTCGTCGCTCGTCTGCCTCCGACACTACCGGCGGCGACTGTGCTGTTTGCCTCTCGAAATTTGAGCAGAGAGACGTCCTCCGTCTTCTCCCGCTGTGTTGTCATGCCTTCCATGTGGAATGCATCGACACTTGGCTTCAGTCGAATTTGACCTGTCCGCTGTGCCGATCTGCCATTTTCGCATCTGATTCGGACCTAATGAGGGTTCTCCAATCGTCTTCCGGAGGCGGAGGAGGAAGCGATAGTTTTCGGCTCGAAATTGGAAACATTAGCCGACGGGGAACGGCACCACCAGAAGTCGTTGGACACGAGCGTGCGAGATCAAGGTCGCGGTCGTATTCTGTTGGCTCGTTCGAGTATTTTGTAGATGAGGATATCGAGGTTCCAATTAGCCACGCGCATCGGAGGAGCGTGTCAGATAATAAGGACGAATCGGTAGTTGTAGAATCTCTAGCGGCGGCGGCGGCTCAGTCGGTCCATGAGGCGAGCTTAGCCGCCGGTGTTGCCTCCAGCGGGAGGAGCTGGCTGAAGGAATACGTCGATAGGCTCTCGTCTTCGATATCATCGAGAACCGTATCCTTTCGAGGCTCCGGAAGGTTCTTTTCCGGCGGTGGTGGTAGCCGCCGAAGCGACGCCACCGTCTCAGCCGAGGACTGCGATGTGGAAGCCATCCGATTAGGGGAGGAAATTAGCGAAACTTTTCGATGGCTCTCTGGGGTATGA 1116 0.5439 MNSPPPYTLNVVGSDPNTFADTASIAEDHADSQHFSSAFQNVNTSVLIIVIILAITVIVSLSLCLLLRHLNLRCLRRLSPSSLSLSSRRNAMPASATATTTPVFSSSRRVSPEIPSASIIDSLPLFTFSSISRRSSASDTTGGDCAVCLSKFEQRDVLRLLPLCCHAFHVECIDTWLQSNLTCPLCRSAIFASDSDLMRVLQSSSGGGGGSDSFRLEIGNISRRGTAPPEVVGHERARSRSRSYSVGSFEYFVDEDIEVPISHAHRRSVSDNKDESVVVESLAAAAAQSVHEASLAAGVASSGRSWLKEYVDRLSSSISSRTVSFRGSGRFFSGGGGSRRSDATVSAEDCDVEAIRLGEEISETFRWLSGV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0837 371 CDD RING-H2_EL5-like 144 187 - -
Prci12g0837 371 SUPERFAMILY RING/U-box 120 193 - -
Prci12g0837 371 Pfam Ring finger domain 144 187 IPR001841 -
Prci12g0837 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Prci12g0837 371 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Prci12g0837 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 273 - -
Prci12g0837 371 FunFam E3 ubiquitin-protein ligase ATL6 105 193 - -
Prci12g0837 371 SMART ring_2 145 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0837 Prci-Chr12 9102218 9105793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0837 118 194 C3H Transcription Factor Family AT5G05810 53.247 3.17e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0837 K10663 - qsa:O6P43_026856 327.791