Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0817 ATGTCCATCTCAACCACCACCAACACCACCACCACCACTTCTTCTCAGATCCTTCAACACACCTCCGCCTTCATCTCCGACGTCCTCTTGCATTCCCAGCTCCGACGCCGCCTCATTTCCACCCTCCTTCGTGAGTCTCAAATCTCCAGCCAAATCACCCTCAAACACCTCAATCTCGCCGCCAATACTCTCGATAATGCTATCTCTGTCTCCAATCCCGCCATTCGATCCTCCTCCCTCAACCTCGCCGAGAAGCTCCTCCTTCCTCTACCTCAAAACCCCGTTTCCTCTTTCCTTCTCTCTCTCATATACATGATCAACAAGCGCCAACTTGAAGCCGCCTTAAGTCTTCTTCAAACCTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAAAGAGCGAGAATACTGCCATCTACATCAGAAAATTCAGCGCGCTACCCAGACGATTATTCAATTTCGGATGAATATGTCGTCTTGCCCTCCACGAAATCTTTGTCGCAGATGAGCAATGATCAAGCTTCAAAGCTAAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGATAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAATAACGGGGACTCGTCAACCAGTCCGCCATTGTCGGTTCTGAAGAGCGATAGAGAAGATGCAGAAGTCGAGCATAGCCAAGGGGAGACAGCGGAAACAAGTGTGCCTTTGTTTAAGAACGGACGGTATAATCAGCCAATATGGACCGAAACGGCACTCTCGAGTAGCAGTTTCAGCGCCAAGTGGTTGAATGCACCATTTTATCCTCAAAGAGTCTCTCCTAAAATTCTCAAACACCAAGAATCTTCTAAAAATCTGTCCTTACCATCCCATTCAGACATAGACGCTGGAACTGAGCCTTCGGTGGATGAAAATATGCCTTGCTATTCGTCAGAATCTGAAGCAGAAACTGAGGAAAAAGACAACATGATGGTATCACTGAAGCCTCGACGAAGCCAAATCCAAGAATCAGAACCTGGACGTTCCCCAGATTATGCCATGGCAGATTATGATCACCAGCCGCATAGAAACGAAAAATGTATGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTCTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCCATCGAAGAGTGGTTTAACAGGGGGAACTCAACCTGTCCAATCACTCGCCAGAAGCTGCAAAATACCCAACTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGACAGTCTACATGCTGAAACTGAAGTAGAAATCAAGTCAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAGGCCAATGTTGATGGGATGATTCGTGAGTTACGACATGCAATCAACAAGCTGTATATGTCAGAGGTCCTCGAGGAGTCTGAGATGGCTGTGCTTCAAATTGAGCAATTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAAAGCATGCTATCCAAACCTCCAATCATTAATGGGTTTATGGAAATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGTAACAGTTTTTCTTCTGGCTGAGATGGGTACTAGAGACAATGCTGTTATTCAGACTCTTACCCAAGTGGACTCTGATGTAGAATGCATTATGGCACTTTTCAAGAAAGGCTTGACCGAGGCTGTTGTACTAATATATCTTCTGAAACCTCCTACTACGACTCTTGCAGAAATGGCCATGCTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCAAAGTCAGCTGTGGTACTTTTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAACTAATAGAGTAATTGGATATATAATTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGCAGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCACGTCATTGCTGAAAGAGTTGAGCTCTCTCCCATTTTGGAAAGCTTCGTTGGGGCGAATGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACCTTCCTCGTTTATATGCAGACAGCCCTTCAAGACCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGTCTATAGATACTCTTATTTCATGCCTCAGGAACACTGATTTCCCGGCTGCCCAAGTAATAGCTGCTGAGACAATAGTGTCATTGCAAGGAAGATTCAACTTCAGTGGGAAGCCTCTTACTAGAGAAGTCCTTCTTAAACGTGCAGGCGTTAATGGAAATTATAGAAATCTTGATCAGATGGATCATATCAGCGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAATTGCGTCCGTTTTAGTTAGCCATGAGTTTGGCCTCCTTTTCGAGGCTTTCGCTGAAGGCGTGAAAAGTCGAAGTACACAACTAAGTTCAGCATGCTTTGTGTCAGCCACATGGCTTACATACATGCTTAACATTCTACCTGATACAGGAACGCGAGGAGCAGCCTGTGTCTGCATGCTCAAGCACTTTGTATCTATATTAAAATCTTCTAAGGACACAGAAGATAGAGTCCTTTCTATGCTTGCTTTAAACAGCTTTCTTCAATACCCTGACGCATTGCTTGATCTTTCTTCCTACACTAAGGATGTCCTAAAAGGTCTAAGAGAGCTAAAGAGATTCTCCCCCCTTGCATCTGAAATGCTCAAATTTTTGGTTGAAGAGAATGAATCTAAAGCAGGCATCTGGATGCATAAGGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCACAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGACAGTGAGGGGGAGCTTATTCCATCTGATACAAGAGACGCAAGAACACACGAAGGCTGTTTCAAGTTTGTCAATTTTAGAATCTATTGACAGACTGTACAGTGGTTCACTTGATCGATCTGTTAAGGTCTGGTCTATCGGAAAGTCAGCAATACAATGCGTACAAGTGCATGACATGAAAGATCATATTCATAATTTAGCTGTAACCAACAACAAATTTTGCTACATTCCCCAGGGAAATGGTGTCAAGGTTCAATCATTGCATGGAGAACTGAGGCTGTTAAACAGTAACAAATACATCAGATGCTTGGCTCTTGCTCAAGAGAGACTATACTGTGGATGTCACGACAACAGTATTCAGGAGATTGATTTGGAAAAAGGAACTGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAGATACATGGTGAACATATATATGCAGCCAGTTCTACTCTGGATGGAGTTGCTATAAAGATATGGAAAAAGTCCAATTATAGCATGATTGGATCACTTGTAACTGCTTCAGAAGTGAGGACGATGGCATTGAGCTCAGAATTAATTTACTTAGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACATAATAGAATTGATACATTACAGATTGGTACGAATGGTAAGATCACTTGCATGGCTATCGATGACAATGAAGAAATTTTGGTGATTGGAACATCTGATGGCCGAATTCAGGCGTGGGGAATAAACTAA 3990 0.4288 MSISTTTNTTTTTSSQILQHTSAFISDVLLHSQLRRRLISTLLRESQISSQITLKHLNLAANTLDNAISVSNPAIRSSSLNLAEKLLLPLPQNPVSSFLLSLIYMINKRQLEAALSLLQTFYLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRARILPSTSENSARYPDDYSISDEYVVLPSTKSLSQMSNDQASKLRELERDYEEAIDDNCRIIAEYFKEVLVNNNGDSSTSPPLSVLKSDREDAEVEHSQGETAETSVPLFKNGRYNQPIWTETALSSSSFSAKWLNAPFYPQRVSPKILKHQESSKNLSLPSHSDIDAGTEPSVDENMPCYSSESEAETEEKDNMMVSLKPRRSQIQESEPGRSPDYAMADYDHQPHRNEKCMPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSDSLHAETEVEIKSTMPSTSPNSVITQANVDGMIRELRHAINKLYMSEVLEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQVTVFLLAEMGTRDNAVIQTLTQVDSDVECIMALFKKGLTEAVVLIYLLKPPTTTLAEMAMLESLITVFDKKEEDLLKMCIKPKSAVVLLLARILGSNEERIASSVAKTLITNRVIGYIIGSFRAEWAEERIAAAEILLRCIQEDGTCRHVIAERVELSPILESFVGANDAERFKIIQFFSELVKLNRRTFNEQILHIIKEEGSFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREESIDTLISCLRNTDFPAAQVIAAETIVSLQGRFNFSGKPLTREVLLKRAGVNGNYRNLDQMDHISGELEMNPEEEKAADDWERKIASVLVSHEFGLLFEAFAEGVKSRSTQLSSACFVSATWLTYMLNILPDTGTRGAACVCMLKHFVSILKSSKDTEDRVLSMLALNSFLQYPDALLDLSSYTKDVLKGLRELKRFSPLASEMLKFLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVRGSLFHLIQETQEHTKAVSSLSILESIDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDHIHNLAVTNNKFCYIPQGNGVKVQSLHGELRLLNSNKYIRCLALAQERLYCGCHDNSIQEIDLEKGTVNTIQSGSKRLLGKANPVYALQIHGEHIYAASSTLDGVAIKIWKKSNYSMIGSLVTASEVRTMALSSELIYLGCKGGAVEIWDRKKHNRIDTLQIGTNGKITCMAIDDNEEILVIGTSDGRIQAWGIN 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0817 1329 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1328 - -
Prci12g0817 1329 SUPERFAMILY ARM repeat 13 588 IPR016024 -
Prci12g0817 1329 SUPERFAMILY RING/U-box 386 467 - -
Prci12g0817 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1119 IPR001680 GO:0005515
Prci12g0817 1329 MobiDBLite consensus disorder prediction 308 322 - -
Prci12g0817 1329 CDD RING-Ubox_PUB 391 443 IPR045210 -
Prci12g0817 1329 Gene3D - 1037 1149 IPR015943 GO:0005515
Prci12g0817 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 467 IPR013083 -
Prci12g0817 1329 MobiDBLite consensus disorder prediction 232 265 - -
Prci12g0817 1329 ProSiteProfiles U-box domain profile. 389 464 IPR003613 GO:0004842|GO:0016567
Prci12g0817 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1295 1329 IPR001680 GO:0005515
Prci12g0817 1329 SMART Ubox_2 393 457 IPR003613 GO:0004842|GO:0016567
Prci12g0817 1329 SUPERFAMILY WD40 repeat-like 1057 1328 IPR036322 GO:0005515
Prci12g0817 1329 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Prci12g0817 1329 SMART WD40_4 1037 1074 IPR001680 GO:0005515
Prci12g0817 1329 SMART WD40_4 1248 1284 IPR001680 GO:0005515
Prci12g0817 1329 SMART WD40_4 1287 1327 IPR001680 GO:0005515
Prci12g0817 1329 SMART WD40_4 1153 1196 IPR001680 GO:0005515
Prci12g0817 1329 SMART WD40_4 1209 1245 IPR001680 GO:0005515
Prci12g0817 1329 Gene3D - 1152 1329 IPR015943 GO:0005515
Prci12g0817 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1295 1329 - -
Prci12g0817 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1119 - -
Prci12g0817 1329 SUPERFAMILY ARM repeat 507 1029 IPR016024 -
Prci12g0817 1329 Pfam U-box domain 391 461 IPR003613 GO:0004842|GO:0016567
Prci12g0817 1329 Coils Coil 193 213 - -
Prci12g0817 1329 MobiDBLite consensus disorder prediction 308 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0817 Prci-Chr12 8572995 8581212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0817 389 470 U-box Gene Family AT1G67530 51.220 1.94e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0817 - - pcin:129289069 2474.89