Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci12g0816 | ATGTCCATCTCAACCACCACCAACACCACCACCACCACTTCTTCTCAGATCCTTCAACACACCTCCGCCTTCATCTCCGACGTCCTCTTGCATTCCCAGCTCCGACGCCGCCTCATTTCCACCCTCCTTCGTGAGTCTCAAATCTCCAGCCAAATCACCCTCAAACACCTCAATCTCGCCGCCAATACTCTCGATAATGCTATCTCTGTCTCCAATCCCGCCATTCGATCCTCCTCCCTCAACCTCGCCGAGAAGCTCCTCCTTCCTCTACCTCAAAACCCCGTTTCCTCTTTCCTTCTCTCTCTCATATACATGATCAACAAGCGCCAACTTGAAGCCGCCTTAAGTCTTCTTCAAACCTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAAAGAGCGAGAATACTGCCATCTACATCAGAAAATTCAGCGCGCTACCCAGACGATTATTCAATTTCGGATGAATATGTCGTCTTGCCCTCCACGAAATCTTTGTCGCAGATGAGCAATGATCAAGCTTCAAAGCTAAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGATAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAATAACGGGGACTCGTCAACCAGTCCGCCATTGTCGGTTCTGAAGAGCGATAGAGAAGATGCAGAAGTCGAGCATAGCCAAGGGGAGACAGCGGAAACAAGTGTGCCTTTGTTTAAGAACGGACGGTATAATCCAATATGGACCGAAACGGCACTCTCGAGTAGCAGTTTCAGCGCCAAGTGGTTGAATGCACCATTTTATCCTCAAAGAGTCTCTCCTAAAATTCTCAAACACCAAGAATCTTCTAAAAATCTGTCCTTACCATCCCATTCAGACATAGACGCTGGAACTGAGCCTTCGGTGGATGAAAATATGCCTTGCTATTCGTCAGAATCTGAAGCAGAAACTGAGGAAAAAGACAACATGATGGTATCACTGAAGCCTCGACGAAGCCAAATCCAAGAATCAGAACCTGGACGTTCCCCAGATTATGCCATGGCAGATTATGATCACCAGCCGCATAGAAACGAAAAATGTATGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTCTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCCATCGAAGAGTGGTTTAACAGGGGGAACTCAACCTGTCCAATCACTCGCCAGAAGCTGCAAAATACCCAACTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGACAGTCTACATGCTGAAACTGAAGTAGAAATCAAGTCAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAGGCCAATGTTGATGGGATGATTCGTGAGTTACGACATGCAATCAACAAGCTGTATATGTCAGAGGTCCTCGAGGAGTCTGAGATGGCTGTGCTTCAAATTGAGCAATTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAAAGCATGCTATCCAAACCTCCAATCATTAATGGGTTTATGGAAATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGTAACAGTTTTTCTTCTGGCTGAGATGGGTACTAGAGACAATGCTGTTATTCAGACTCTTACCCAAGTGGACTCTGATGTAGAATGCATTATGGCACTTTTCAAGAAAGGCTTGACCGAGGCTGTTGTACTAATATATCTTCTGAAACCTCCTACTACGACTCTTGCAGAAATGGCCATGCTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCAAAGTCAGCTGTGGTACTTTTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAACTAATAGAGTAATTGGATATATAATTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGCAGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCACGTCATTGCTGAAAGAGTTGAGCTCTCTCCCATTTTGGAAAGCTTCGTTGGGGCGAATGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACCTTCCTCGTTTATATGCAGACAGCCCTTCAAGACCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGTCTATAGATACTCTTATTTCATGCCTCAGGAACACTGATTTCCCGGCTGCCCAAGTAATAGCTGCTGAGACAATAGTGTCATTGCAAGGAAGATTCAACTTCAGTGGGAAGCCTCTTACTAGAGAAGTCCTTCTTAAACGTGCAGGCGTTAATGGAAATTATAGAAATCTTGATCAGATGGATCATATCAGCGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAATTGCGTCCGTTTTAGTTAGCCATGAGTTTGGCCTCCTTTTCGAGGCTTTCGCTGAAGGCGTGAAAAGTCGAAGTACACAACTAAGTTCAGCATGCTTTGTGTCAGCCACATGGCTTACATACATGCTTAACATTCTACCTGATACAGGAACGCGAGGAGCAGCCTGTGTCTGCATGCTCAAGCACTTTGTATCTATATTAAAATCTTCTAAGGACACAGAAGATAGAGTCCTTTCTATGCTTGCTTTAAACAGCTTTCTTCAATACCCTGACGCATTGCTTGATCTTTCTTCCTACACTAAGGATGTCCTAAAAGGTCTAAGAGAGCTAAAGAGATTCTCCCCCCTTGCATCTGAAATGCTCAAATTTTTGGTTGAAGAGAATGAATCTAAAGCAGGCATCTGGATGCATAAGGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCACAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGACAGTGAGGGGGAGCTTATTCCATCTGATACAAGAGACGCAAGAACACACGAAGGCTGTTTCAAGTTTGTCAATTTTAGAATCTATTGACAGACTGTACAGTGGTTCACTTGATCGATCTGTTAAGGTCTGGTCTATCGGAAAGTCAGCAATACAATGCGTACAAGTGCATGACATGAAAGATCATATTCATAATTTAGCTGTAACCAACAACAAATTTTGCTACATTCCCCAGGGAAATGGTGTCAAGGTTCAATCATTGCATGGAGAACTGAGGCTGTTAAACAGTAACAAATACATCAGATGCTTGGCTCTTGCTCAAGAGAGACTATACTGTGGATGTCACGACAACAGTATTCAGGAGATTGATTTGGAAAAAGGAACTGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAGATACATGGTGAACATATATATGCAGCCAGTTCTACTCTGGATGGAGTTGCTATAAAGATATGGAAAAAGTCCAATTATAGCATGATTGGATCACTTGTAACTGCTTCAGAAGTGAGGACGATGGCATTGAGCTCAGAATTAATTTACTTAGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACATAATAGAATTGATACATTACAGATTGGTACGAATGGTAAGATCACTTGCATGGCTATCGATGACAATGAAGAAATTTTGGTGATTGGAACATCTGATGGCCGAATTCAGGCGTGGGGAATAAACTAA | 3987 | 0.4286 | MSISTTTNTTTTTSSQILQHTSAFISDVLLHSQLRRRLISTLLRESQISSQITLKHLNLAANTLDNAISVSNPAIRSSSLNLAEKLLLPLPQNPVSSFLLSLIYMINKRQLEAALSLLQTFYLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRARILPSTSENSARYPDDYSISDEYVVLPSTKSLSQMSNDQASKLRELERDYEEAIDDNCRIIAEYFKEVLVNNNGDSSTSPPLSVLKSDREDAEVEHSQGETAETSVPLFKNGRYNPIWTETALSSSSFSAKWLNAPFYPQRVSPKILKHQESSKNLSLPSHSDIDAGTEPSVDENMPCYSSESEAETEEKDNMMVSLKPRRSQIQESEPGRSPDYAMADYDHQPHRNEKCMPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSDSLHAETEVEIKSTMPSTSPNSVITQANVDGMIRELRHAINKLYMSEVLEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQVTVFLLAEMGTRDNAVIQTLTQVDSDVECIMALFKKGLTEAVVLIYLLKPPTTTLAEMAMLESLITVFDKKEEDLLKMCIKPKSAVVLLLARILGSNEERIASSVAKTLITNRVIGYIIGSFRAEWAEERIAAAEILLRCIQEDGTCRHVIAERVELSPILESFVGANDAERFKIIQFFSELVKLNRRTFNEQILHIIKEEGSFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREESIDTLISCLRNTDFPAAQVIAAETIVSLQGRFNFSGKPLTREVLLKRAGVNGNYRNLDQMDHISGELEMNPEEEKAADDWERKIASVLVSHEFGLLFEAFAEGVKSRSTQLSSACFVSATWLTYMLNILPDTGTRGAACVCMLKHFVSILKSSKDTEDRVLSMLALNSFLQYPDALLDLSSYTKDVLKGLRELKRFSPLASEMLKFLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVRGSLFHLIQETQEHTKAVSSLSILESIDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDHIHNLAVTNNKFCYIPQGNGVKVQSLHGELRLLNSNKYIRCLALAQERLYCGCHDNSIQEIDLEKGTVNTIQSGSKRLLGKANPVYALQIHGEHIYAASSTLDGVAIKIWKKSNYSMIGSLVTASEVRTMALSSELIYLGCKGGAVEIWDRKKHNRIDTLQIGTNGKITCMAIDDNEEILVIGTSDGRIQAWGIN | 1328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci12g0816 | 1328 | MobiDBLite | consensus disorder prediction | 307 | 321 | - | - | |
Prci12g0816 | 1328 | SUPERFAMILY | WD40 repeat-like | 1056 | 1327 | IPR036322 | GO:0005515 | |
Prci12g0816 | 1328 | SUPERFAMILY | ARM repeat | 13 | 607 | IPR016024 | - | |
Prci12g0816 | 1328 | Gene3D | - | 1036 | 1148 | IPR015943 | GO:0005515 | |
Prci12g0816 | 1328 | MobiDBLite | consensus disorder prediction | 232 | 262 | - | - | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1078 | 1117 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1247 | 1283 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1286 | 1326 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1208 | 1244 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1152 | 1195 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SMART | WD40_4 | 1036 | 1073 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | SUPERFAMILY | RING/U-box | 385 | 466 | - | - | |
Prci12g0816 | 1328 | SUPERFAMILY | ARM repeat | 506 | 1028 | IPR016024 | - | |
Prci12g0816 | 1328 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 6 | 1327 | - | - | |
Prci12g0816 | 1328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 466 | IPR013083 | - | |
Prci12g0816 | 1328 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1294 | 1328 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | CDD | RING-Ubox_PUB | 390 | 442 | IPR045210 | - | |
Prci12g0816 | 1328 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1085 | 1118 | IPR001680 | GO:0005515 | |
Prci12g0816 | 1328 | MobiDBLite | consensus disorder prediction | 307 | 376 | - | - | |
Prci12g0816 | 1328 | Gene3D | - | 1151 | 1328 | IPR015943 | GO:0005515 | |
Prci12g0816 | 1328 | Pfam | U-box domain | 390 | 460 | IPR003613 | GO:0004842|GO:0016567 | |
Prci12g0816 | 1328 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 1085 | 1118 | - | - | |
Prci12g0816 | 1328 | SMART | Ubox_2 | 392 | 456 | IPR003613 | GO:0004842|GO:0016567 | |
Prci12g0816 | 1328 | Coils | Coil | 193 | 213 | - | - | |
Prci12g0816 | 1328 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 1294 | 1328 | - | - | |
Prci12g0816 | 1328 | ProSiteProfiles | U-box domain profile. | 388 | 463 | IPR003613 | GO:0004842|GO:0016567 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci12g0816 | Prci-Chr12 | 8572995 | 8581212 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci12g0816 | 388 | 469 | U-box Gene Family | AT1G67530 | 51.220 | 1.92e-18 | 89.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci12g0816 | - | - | pcin:129289069 | 2468.34 |