Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0816 ATGTCCATCTCAACCACCACCAACACCACCACCACCACTTCTTCTCAGATCCTTCAACACACCTCCGCCTTCATCTCCGACGTCCTCTTGCATTCCCAGCTCCGACGCCGCCTCATTTCCACCCTCCTTCGTGAGTCTCAAATCTCCAGCCAAATCACCCTCAAACACCTCAATCTCGCCGCCAATACTCTCGATAATGCTATCTCTGTCTCCAATCCCGCCATTCGATCCTCCTCCCTCAACCTCGCCGAGAAGCTCCTCCTTCCTCTACCTCAAAACCCCGTTTCCTCTTTCCTTCTCTCTCTCATATACATGATCAACAAGCGCCAACTTGAAGCCGCCTTAAGTCTTCTTCAAACCTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAAAGAGCGAGAATACTGCCATCTACATCAGAAAATTCAGCGCGCTACCCAGACGATTATTCAATTTCGGATGAATATGTCGTCTTGCCCTCCACGAAATCTTTGTCGCAGATGAGCAATGATCAAGCTTCAAAGCTAAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGATAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAATAACGGGGACTCGTCAACCAGTCCGCCATTGTCGGTTCTGAAGAGCGATAGAGAAGATGCAGAAGTCGAGCATAGCCAAGGGGAGACAGCGGAAACAAGTGTGCCTTTGTTTAAGAACGGACGGTATAATCCAATATGGACCGAAACGGCACTCTCGAGTAGCAGTTTCAGCGCCAAGTGGTTGAATGCACCATTTTATCCTCAAAGAGTCTCTCCTAAAATTCTCAAACACCAAGAATCTTCTAAAAATCTGTCCTTACCATCCCATTCAGACATAGACGCTGGAACTGAGCCTTCGGTGGATGAAAATATGCCTTGCTATTCGTCAGAATCTGAAGCAGAAACTGAGGAAAAAGACAACATGATGGTATCACTGAAGCCTCGACGAAGCCAAATCCAAGAATCAGAACCTGGACGTTCCCCAGATTATGCCATGGCAGATTATGATCACCAGCCGCATAGAAACGAAAAATGTATGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTCTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCCATCGAAGAGTGGTTTAACAGGGGGAACTCAACCTGTCCAATCACTCGCCAGAAGCTGCAAAATACCCAACTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGACAGTCTACATGCTGAAACTGAAGTAGAAATCAAGTCAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAGGCCAATGTTGATGGGATGATTCGTGAGTTACGACATGCAATCAACAAGCTGTATATGTCAGAGGTCCTCGAGGAGTCTGAGATGGCTGTGCTTCAAATTGAGCAATTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAAAGCATGCTATCCAAACCTCCAATCATTAATGGGTTTATGGAAATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGTAACAGTTTTTCTTCTGGCTGAGATGGGTACTAGAGACAATGCTGTTATTCAGACTCTTACCCAAGTGGACTCTGATGTAGAATGCATTATGGCACTTTTCAAGAAAGGCTTGACCGAGGCTGTTGTACTAATATATCTTCTGAAACCTCCTACTACGACTCTTGCAGAAATGGCCATGCTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCAAAGTCAGCTGTGGTACTTTTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAACTAATAGAGTAATTGGATATATAATTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGCAGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCACGTCATTGCTGAAAGAGTTGAGCTCTCTCCCATTTTGGAAAGCTTCGTTGGGGCGAATGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACCTTCCTCGTTTATATGCAGACAGCCCTTCAAGACCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGTCTATAGATACTCTTATTTCATGCCTCAGGAACACTGATTTCCCGGCTGCCCAAGTAATAGCTGCTGAGACAATAGTGTCATTGCAAGGAAGATTCAACTTCAGTGGGAAGCCTCTTACTAGAGAAGTCCTTCTTAAACGTGCAGGCGTTAATGGAAATTATAGAAATCTTGATCAGATGGATCATATCAGCGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAATTGCGTCCGTTTTAGTTAGCCATGAGTTTGGCCTCCTTTTCGAGGCTTTCGCTGAAGGCGTGAAAAGTCGAAGTACACAACTAAGTTCAGCATGCTTTGTGTCAGCCACATGGCTTACATACATGCTTAACATTCTACCTGATACAGGAACGCGAGGAGCAGCCTGTGTCTGCATGCTCAAGCACTTTGTATCTATATTAAAATCTTCTAAGGACACAGAAGATAGAGTCCTTTCTATGCTTGCTTTAAACAGCTTTCTTCAATACCCTGACGCATTGCTTGATCTTTCTTCCTACACTAAGGATGTCCTAAAAGGTCTAAGAGAGCTAAAGAGATTCTCCCCCCTTGCATCTGAAATGCTCAAATTTTTGGTTGAAGAGAATGAATCTAAAGCAGGCATCTGGATGCATAAGGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCACAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGACAGTGAGGGGGAGCTTATTCCATCTGATACAAGAGACGCAAGAACACACGAAGGCTGTTTCAAGTTTGTCAATTTTAGAATCTATTGACAGACTGTACAGTGGTTCACTTGATCGATCTGTTAAGGTCTGGTCTATCGGAAAGTCAGCAATACAATGCGTACAAGTGCATGACATGAAAGATCATATTCATAATTTAGCTGTAACCAACAACAAATTTTGCTACATTCCCCAGGGAAATGGTGTCAAGGTTCAATCATTGCATGGAGAACTGAGGCTGTTAAACAGTAACAAATACATCAGATGCTTGGCTCTTGCTCAAGAGAGACTATACTGTGGATGTCACGACAACAGTATTCAGGAGATTGATTTGGAAAAAGGAACTGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAGATACATGGTGAACATATATATGCAGCCAGTTCTACTCTGGATGGAGTTGCTATAAAGATATGGAAAAAGTCCAATTATAGCATGATTGGATCACTTGTAACTGCTTCAGAAGTGAGGACGATGGCATTGAGCTCAGAATTAATTTACTTAGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACATAATAGAATTGATACATTACAGATTGGTACGAATGGTAAGATCACTTGCATGGCTATCGATGACAATGAAGAAATTTTGGTGATTGGAACATCTGATGGCCGAATTCAGGCGTGGGGAATAAACTAA 3987 0.4286 MSISTTTNTTTTTSSQILQHTSAFISDVLLHSQLRRRLISTLLRESQISSQITLKHLNLAANTLDNAISVSNPAIRSSSLNLAEKLLLPLPQNPVSSFLLSLIYMINKRQLEAALSLLQTFYLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRARILPSTSENSARYPDDYSISDEYVVLPSTKSLSQMSNDQASKLRELERDYEEAIDDNCRIIAEYFKEVLVNNNGDSSTSPPLSVLKSDREDAEVEHSQGETAETSVPLFKNGRYNPIWTETALSSSSFSAKWLNAPFYPQRVSPKILKHQESSKNLSLPSHSDIDAGTEPSVDENMPCYSSESEAETEEKDNMMVSLKPRRSQIQESEPGRSPDYAMADYDHQPHRNEKCMPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSDSLHAETEVEIKSTMPSTSPNSVITQANVDGMIRELRHAINKLYMSEVLEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQVTVFLLAEMGTRDNAVIQTLTQVDSDVECIMALFKKGLTEAVVLIYLLKPPTTTLAEMAMLESLITVFDKKEEDLLKMCIKPKSAVVLLLARILGSNEERIASSVAKTLITNRVIGYIIGSFRAEWAEERIAAAEILLRCIQEDGTCRHVIAERVELSPILESFVGANDAERFKIIQFFSELVKLNRRTFNEQILHIIKEEGSFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREESIDTLISCLRNTDFPAAQVIAAETIVSLQGRFNFSGKPLTREVLLKRAGVNGNYRNLDQMDHISGELEMNPEEEKAADDWERKIASVLVSHEFGLLFEAFAEGVKSRSTQLSSACFVSATWLTYMLNILPDTGTRGAACVCMLKHFVSILKSSKDTEDRVLSMLALNSFLQYPDALLDLSSYTKDVLKGLRELKRFSPLASEMLKFLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVRGSLFHLIQETQEHTKAVSSLSILESIDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDHIHNLAVTNNKFCYIPQGNGVKVQSLHGELRLLNSNKYIRCLALAQERLYCGCHDNSIQEIDLEKGTVNTIQSGSKRLLGKANPVYALQIHGEHIYAASSTLDGVAIKIWKKSNYSMIGSLVTASEVRTMALSSELIYLGCKGGAVEIWDRKKHNRIDTLQIGTNGKITCMAIDDNEEILVIGTSDGRIQAWGIN 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0816 1328 MobiDBLite consensus disorder prediction 307 321 - -
Prci12g0816 1328 SUPERFAMILY WD40 repeat-like 1056 1327 IPR036322 GO:0005515
Prci12g0816 1328 SUPERFAMILY ARM repeat 13 607 IPR016024 -
Prci12g0816 1328 Gene3D - 1036 1148 IPR015943 GO:0005515
Prci12g0816 1328 MobiDBLite consensus disorder prediction 232 262 - -
Prci12g0816 1328 SMART WD40_4 1078 1117 IPR001680 GO:0005515
Prci12g0816 1328 SMART WD40_4 1247 1283 IPR001680 GO:0005515
Prci12g0816 1328 SMART WD40_4 1286 1326 IPR001680 GO:0005515
Prci12g0816 1328 SMART WD40_4 1208 1244 IPR001680 GO:0005515
Prci12g0816 1328 SMART WD40_4 1152 1195 IPR001680 GO:0005515
Prci12g0816 1328 SMART WD40_4 1036 1073 IPR001680 GO:0005515
Prci12g0816 1328 SUPERFAMILY RING/U-box 385 466 - -
Prci12g0816 1328 SUPERFAMILY ARM repeat 506 1028 IPR016024 -
Prci12g0816 1328 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1327 - -
Prci12g0816 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 466 IPR013083 -
Prci12g0816 1328 ProSiteProfiles Trp-Asp (WD) repeats profile. 1294 1328 IPR001680 GO:0005515
Prci12g0816 1328 CDD RING-Ubox_PUB 390 442 IPR045210 -
Prci12g0816 1328 ProSiteProfiles Trp-Asp (WD) repeats profile. 1085 1118 IPR001680 GO:0005515
Prci12g0816 1328 MobiDBLite consensus disorder prediction 307 376 - -
Prci12g0816 1328 Gene3D - 1151 1328 IPR015943 GO:0005515
Prci12g0816 1328 Pfam U-box domain 390 460 IPR003613 GO:0004842|GO:0016567
Prci12g0816 1328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1085 1118 - -
Prci12g0816 1328 SMART Ubox_2 392 456 IPR003613 GO:0004842|GO:0016567
Prci12g0816 1328 Coils Coil 193 213 - -
Prci12g0816 1328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1294 1328 - -
Prci12g0816 1328 ProSiteProfiles U-box domain profile. 388 463 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0816 Prci-Chr12 8572995 8581212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0816 388 469 U-box Gene Family AT1G67530 51.220 1.92e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0816 - - pcin:129289069 2468.34