Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0815 ATGTCCATCTCAACCACCACCAACACCACCACCACCACTTCTTCTCAGATCCTTCAACACACCTCCGCCTTCATCTCCGACGTCCTCTTGCATTCCCAGCTCCGACGCCGCCTCATTTCCACCCTCCTTCGTGAGTCTCAAATCTCCAGCCAAATCACCCTCAAACACCTCAATCTCGCCGCCAATACTCTCGATAATGCTATCTCTGTCTCCAATCCCGCCATTCGATCCTCCTCCCTCAACCTCGCCGAGAAGCTCCTCCTTCCTCTACCTCAAAACCCCGTTTCCTCTTTCCTTCTCTCTCTCATATACATGATCAACAAGCGCCAACTTGAAGCCGCCTTAAGTCTTCTTCAAACCTTCTATTTAAGCCCTTCGTTGGCCCGATCGGAAATCGCTCCGATTCTCTACGAGCAGCTGTTTTCTCTCCACCTCCTCCCAGTTTTCCGATCCTTCGATGAACAAAGAGCGAGAATACTGCCATCTACATCAGAAAATTCAGCGCGCTACCCAGACGATTATTCAATTTCGGATGAATATGTCGTCTTGCCCTCCACGAAATCTTTGTCGCAGATGAGCAATGATCAAGCTTCAAAGCTAAGGGAATTGGAGAGAGACTACGAAGAGGCTATTGATGATAATTGCAGGATTATTGCCGAGTACTTCAAAGAAGTTTTGGTGAATAATAACGGGGACTCGTCAACCAGTCCGCCATTGTCGGTTCTGAAGAGCGATAGAGAAGATGCAGAAGTCGAGCATAGCCAAGGGGAGACAGCGGAAACAAGTGTGCCTTTGTTTAAGAACGGACGGTATAATCAGCCAATATGGACCGAAACGGCACTCTCGAGTAGCAGTTTCAGCGCCAAGTGGTTGAATGCACCATTTTATCCTCAAAGAGTCTCTCCTAAAATTCTCAAACACCAAGAATCTTCTAAAAATCTGTCCTTACCATCCCATTCAGACATAGACGCTGGAACTGAGCCTTCGGTGGATGAAAATATGCCTTGCTATTCGTCAGAATCTGAAGCAGAAACTGAGGAAAAAGACAACATGATGGTATCACTGAAGCCTCGACGAAGCCAAATCCAAGAATCAGAACCTGGACGTTCCCCAGATTATGCCATGGCAGATTATGATCACCAGCCGCATAGAAACGAAAAATGTATGCCTCCCAAGGACTTTGTCTGCCCAATAACTAGCAATCTCTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGGAAAGCCATCGAAGAGTGGTTTAACAGGGGGAACTCAACCTGTCCAATCACTCGCCAGAAGCTGCAAAATACCCAACTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAATCCCATCTCCATCTCCATCTGACAGTCTACATGCTGAAACTGAAGTAGAAATCAAGTCAACAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAGGCCAATGTTGATGGGATGATTCGTGAGTTACGACATGCAATCAACAAGCTGTATATGTCAGAGGTCCTCGAGGAGTCTGAGATGGCTGTGCTTCAAATTGAGCAATTATGGAAAGAAGTAAACCTGGGAGTGGATATCCAAAGCATGCTATCCAAACCTCCAATCATTAATGGGTTTATGGAAATTCTATTTAATTCTGTTGATCCCCAGGTGCTTCAAGTAACAGTTTTTCTTCTGGCTGAGATGGGTACTAGAGACAATGCTGTTATTCAGACTCTTACCCAAGTGGACTCTGATGTAGAATGCATTATGGCACTTTTCAAGAAAGGCTTGACCGAGGCTGTTGTACTAATATATCTTCTGAAACCTCCTACTACGACTCTTGCAGAAATGGCCATGCTGGAGTCTCTCATAACAGTTTTTGATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAGCCAAAGTCAGCTGTGGTACTTTTACTGGCACGGATTCTTGGAAGCAATGAGGAGAGAATTGCATCTTCAGTAGCCAAGACTTTGATAACTAATAGAGTAATTGGATATATAATTGGCAGTTTTCGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGCAGAGATCTTATTAAGATGCATCCAGGAGGATGGAACTTGCAGGCACGTCATTGCTGAAAGAGTTGAGCTCTCTCCCATTTTGGAAAGCTTCGTTGGGGCGAATGATGCAGAACGTTTTAAGATAATTCAATTTTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGTTCTTTCAGTACAATGCACACCTTCCTCGTTTATATGCAGACAGCCCTTCAAGACCAATGTCCAGTTGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAAGAGTCTATAGATACTCTTATTTCATGCCTCAGGAACACTGATTTCCCGGCTGCCCAAGTAATAGCTGCTGAGACAATAGTGTCATTGCAAGGAAGATTCAACTTCAGTGGGAAGCCTCTTACTAGAGAAGTCCTTCTTAAACGTGCAGGCGTTAATGGAAATTATAGAAATCTTGATCAGATGGATCATATCAGCGGAGAACTTGAAATGAATCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAGAGAAAAATTGCGTCCGTTTTAGTTAGCCATGAGTTTGGCCTCCTTTTCGAGGCTTTCGCTGAAGGCGTGAAAAGTCGAAGAACGCGAGGAGCAGCCTGTGTCTGCATGCTCAAGCACTTTGTATCTATATTAAAATCTTCTAAGGACACAGAAGATAGAGTCCTTTCTATGCTTGCTTTAAACAGCTTTCTTCAATACCCTGACGCATTGCTTGATCTTTCTTCCTACACTAAGGATGTCCTAAAAGGTCTAAGAGAGCTAAAGAGATTCTCCCCCCTTGCATCTGAAATGCTCAAATTTTTGGTTGAAGAGAATGAATCTAAAGCAGGCATCTGGATGCATAAGGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGAAGTGTTGTCTGTCATTTGTCACAAGGATAAAATTTTTTCAGGTCATTCAGATGGAACTATCAAGGTCTGGACAGTGAGGGGGAGCTTATTCCATCTGATACAAGAGACGCAAGAACACACGAAGGCTGTTTCAAGTTTGTCAATTTTAGAATCTATTGACAGACTGTACAGTGGTTCACTTGATCGATCTGTTAAGGTCTGGTCTATCGGAAAGTCAGCAATACAATGCGTACAAGTGCATGACATGAAAGATCATATTCATAATTTAGCTGTAACCAACAACAAATTTTGCTACATTCCCCAGGGAAATGGTGTCAAGGTTCAATCATTGCATGGAGAACTGAGGCTGTTAAACAGTAACAAATACATCAGATGCTTGGCTCTTGCTCAAGAGAGACTATACTGTGGATGTCACGACAACAGTATTCAGGAGATTGATTTGGAAAAAGGAACTGTCAATACCATTCAAAGTGGTTCTAAAAGATTGCTTGGTAAAGCAAATCCCGTTTATGCCCTGCAGATACATGGTGAACATATATATGCAGCCAGTTCTACTCTGGATGGAGTTGCTATAAAGATATGGAAAAAGTCCAATTATAGCATGATTGGATCACTTGTAACTGCTTCAGAAGTGAGGACGATGGCATTGAGCTCAGAATTAATTTACTTAGGATGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAACATAATAGAATTGATACATTACAGATTGGTACGAATGGTAAGATCACTTGCATGGCTATCGATGACAATGAAGAAATTTTGGTGATTGGAACATCTGATGGCCGAATTCAGGCGTGGGGAATAAACTAA 3915 0.4291 MSISTTTNTTTTTSSQILQHTSAFISDVLLHSQLRRRLISTLLRESQISSQITLKHLNLAANTLDNAISVSNPAIRSSSLNLAEKLLLPLPQNPVSSFLLSLIYMINKRQLEAALSLLQTFYLSPSLARSEIAPILYEQLFSLHLLPVFRSFDEQRARILPSTSENSARYPDDYSISDEYVVLPSTKSLSQMSNDQASKLRELERDYEEAIDDNCRIIAEYFKEVLVNNNGDSSTSPPLSVLKSDREDAEVEHSQGETAETSVPLFKNGRYNQPIWTETALSSSSFSAKWLNAPFYPQRVSPKILKHQESSKNLSLPSHSDIDAGTEPSVDENMPCYSSESEAETEEKDNMMVSLKPRRSQIQESEPGRSPDYAMADYDHQPHRNEKCMPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSPSDSLHAETEVEIKSTMPSTSPNSVITQANVDGMIRELRHAINKLYMSEVLEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQVTVFLLAEMGTRDNAVIQTLTQVDSDVECIMALFKKGLTEAVVLIYLLKPPTTTLAEMAMLESLITVFDKKEEDLLKMCIKPKSAVVLLLARILGSNEERIASSVAKTLITNRVIGYIIGSFRAEWAEERIAAAEILLRCIQEDGTCRHVIAERVELSPILESFVGANDAERFKIIQFFSELVKLNRRTFNEQILHIIKEEGSFSTMHTFLVYMQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREESIDTLISCLRNTDFPAAQVIAAETIVSLQGRFNFSGKPLTREVLLKRAGVNGNYRNLDQMDHISGELEMNPEEEKAADDWERKIASVLVSHEFGLLFEAFAEGVKSRRTRGAACVCMLKHFVSILKSSKDTEDRVLSMLALNSFLQYPDALLDLSSYTKDVLKGLRELKRFSPLASEMLKFLVEENESKAGIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVRGSLFHLIQETQEHTKAVSSLSILESIDRLYSGSLDRSVKVWSIGKSAIQCVQVHDMKDHIHNLAVTNNKFCYIPQGNGVKVQSLHGELRLLNSNKYIRCLALAQERLYCGCHDNSIQEIDLEKGTVNTIQSGSKRLLGKANPVYALQIHGEHIYAASSTLDGVAIKIWKKSNYSMIGSLVTASEVRTMALSSELIYLGCKGGAVEIWDRKKHNRIDTLQIGTNGKITCMAIDDNEEILVIGTSDGRIQAWGIN 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0815 1304 ProSiteProfiles Trp-Asp (WD) repeats profile. 1061 1094 IPR001680 GO:0005515
Prci12g0815 1304 MobiDBLite consensus disorder prediction 308 322 - -
Prci12g0815 1304 CDD RING-Ubox_PUB 391 443 IPR045210 -
Prci12g0815 1304 SUPERFAMILY ARM repeat 13 608 IPR016024 -
Prci12g0815 1304 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1270 1304 - -
Prci12g0815 1304 SUPERFAMILY RING/U-box 386 467 - -
Prci12g0815 1304 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1061 1094 - -
Prci12g0815 1304 SMART WD40_4 1262 1302 IPR001680 GO:0005515
Prci12g0815 1304 SMART WD40_4 1223 1259 IPR001680 GO:0005515
Prci12g0815 1304 SMART WD40_4 1184 1220 IPR001680 GO:0005515
Prci12g0815 1304 SMART WD40_4 1054 1093 IPR001680 GO:0005515
Prci12g0815 1304 SMART WD40_4 1128 1171 IPR001680 GO:0005515
Prci12g0815 1304 SMART WD40_4 1012 1049 IPR001680 GO:0005515
Prci12g0815 1304 SUPERFAMILY WD40 repeat-like 1032 1303 IPR036322 GO:0005515
Prci12g0815 1304 MobiDBLite consensus disorder prediction 232 265 - -
Prci12g0815 1304 ProSiteProfiles U-box domain profile. 389 464 IPR003613 GO:0004842|GO:0016567
Prci12g0815 1304 SMART Ubox_2 393 457 IPR003613 GO:0004842|GO:0016567
Prci12g0815 1304 Gene3D - 1004 1304 IPR015943 GO:0005515
Prci12g0815 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 467 IPR013083 -
Prci12g0815 1304 SUPERFAMILY ARM repeat 507 1004 IPR016024 -
Prci12g0815 1304 Pfam U-box domain 391 461 IPR003613 GO:0004842|GO:0016567
Prci12g0815 1304 Coils Coil 193 213 - -
Prci12g0815 1304 ProSiteProfiles Trp-Asp (WD) repeats profile. 1270 1304 IPR001680 GO:0005515
Prci12g0815 1304 MobiDBLite consensus disorder prediction 308 377 - -
Prci12g0815 1304 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 927 1303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0815 Prci-Chr12 8572995 8581214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0815 389 470 U-box Gene Family AT1G67530 51.220 1.67e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0815 - - pcin:129289069 2491.07