Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0736 ATGGGGGAGAAAGATGATGGGTCGGGTTTGGGTTTGAGTCTGAGCTTGGGACTTGGAATGAATCAGTCTCCTTCTTTGAAGGAATCTCTTATGCAGAAACCTTCTCGGAATCTTCCGAATCAAAGAACTTCCTGGAATGATATTTTCTTCCAGCTTCCTGATCGGAGCTGCGAGGCGAGAACGTTGCCCCGGGGTGTGGATATAAATTTGGCGCCGCCATCAACAGTGGTGGTGGACTGCGACGACGAGAATGGCGTCTCCTCGCCGAACAGTACTGTGTCGAGCATCAGCGGAAAACGGAGCGAGAGAGAGTCGATTGGCGGTGAGCACGAAGCCGAGCGTGCTTCATGTTCTCGTGGGAGCGACGATGATGACGGCGGCGCCGGCGGCAGGGACGTAGACGGCGACGGCGACGGAGACACATCGAGGAAGAAGCTCCGGCTGTCGAAGGAACAATCGATTGTGCTGGAAGAAACGTTCAAGGAGCACAATACCCTCAATCCAAAGCAAAAACAGGAATTGGCAAAACAGCTGAATCTGAGGCCGAGGCAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGACTGTGAGTACTTGAGGAGATGTTGTGAGACTCTAACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTGCAAGAGCTTAGGGCTCTAAAACTATCCCCACAATTCTACATGCACATGAACCCTCCCACTACTCTCACAATGTGCCCTTCGTGCGAGCGTGTCGCGGTCTCATCAACATCCTCGGCCTCATCAGTGGCGGCCGCCGGAACTCCTCCGGCAATAGCTCCGTCTAACTCCGCCCCATCGAGCTCTAGCATTCAAAGGCCGGTTCCTCTCCTCCCCTGGGTGGCTAACTCAAATCGAAACCGGCCAGTCGACAGCCTGAATCCCCGGCCATAG 948 0.539 MGEKDDGSGLGLSLSLGLGMNQSPSLKESLMQKPSRNLPNQRTSWNDIFFQLPDRSCEARTLPRGVDINLAPPSTVVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGAGGRDVDGDGDGDTSRKKLRLSKEQSIVLEETFKEHNTLNPKQKQELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQFYMHMNPPTTLTMCPSCERVAVSSTSSASSVAAAGTPPAIAPSNSAPSSSSIQRPVPLLPWVANSNRNRPVDSLNPRP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0736 315 Gene3D - 147 197 - -
Prci12g0736 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 271 - -
Prci12g0736 315 MobiDBLite consensus disorder prediction 102 146 - -
Prci12g0736 315 MobiDBLite consensus disorder prediction 79 146 - -
Prci12g0736 315 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Prci12g0736 315 MobiDBLite consensus disorder prediction 268 291 - -
Prci12g0736 315 FunFam Homeobox-leucine zipper protein 18 131 204 - -
Prci12g0736 315 SMART HOX_1 141 203 IPR001356 GO:0003677
Prci12g0736 315 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Prci12g0736 315 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Prci12g0736 315 MobiDBLite consensus disorder prediction 84 101 - -
Prci12g0736 315 SUPERFAMILY Homeodomain-like 130 200 IPR009057 -
Prci12g0736 315 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Prci12g0736 315 MobiDBLite consensus disorder prediction 1 43 - -
Prci12g0736 315 Coils Coil 205 235 - -
Prci12g0736 315 MobiDBLite consensus disorder prediction 15 43 - -
Prci12g0736 315 CDD homeodomain 143 200 IPR001356 GO:0003677
Prci12g0736 315 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Prci12g0736 315 Pfam Homeodomain 143 197 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0736 Prci-Chr12 6967659 6970198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0736 31 308 Homeobox Transcription Factor Family AT3G60390 59.044 3.18e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci12g0736 HD-ZIP_N 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0736 K09338 - qsa:O6P43_026962 348.206