LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g0726	ATGGTACTCATTGCAACAAGACATAAGCATATACTTCATGACCTTAATGTCAAATATGTCTATGAAATGAAAAGAATTGACAACAGTGAATCTCTTGAGCTTTTCAGCTGGAATGCTTTTAAGCATTCTAGTCCAAGAGATGGTTTTGTTAATCTTGCAAAAAGTATAGTTACATATTGTGAAGGATTGCCACTGGTTCTTGAAGTGCTTGGCTCTCTTTTGTCCTGTAAGACAAAGCCAGAGTGGAAAAGTGTATTGTTGAAATTGAAAGGCATTCCCACAGGTCAAATACAAGAGAAGCTCAAAATAAGCTGCATTGAAGCTTTCATGGATAATGGGATTAGAAGGGGAGAAAACATCCCATCCACATTAACACAGGCAATTGAAAATTCCAGGATGTCAATCATTGTATTTTCAATTGATTATACTGGCTCTAGATGGTGCTTGCAAGAATTAGAGAAAATCATTCAGTGTCACAGAACTACTGGTCATGAGGTCTTGCCTATATTCTATGGTGTCCAACCATCAGATGTACGTAAGCAAATCGGCTCTTTTGGAAAAGCATTGGAAGGCCTTGTAAGGAGAACTTCAGCCAGCGAAGACAAGAAATTCAATTGGATGAGAGCACTTCATGAAGCTGCCAATTTATCTGGTTGGTACTCAGGTCATTATAGAACTGATGCTGAGTTGATTGATCATGTTATTGAAACTGTCACCCTGAAGTTGAATGACCACATGTATTTATTCGTTGCTCATCATCCTGTGGGAATAAACTCTCGCATGCAAGAAATCACCCACTTGTTAAGTGGTAAATCAGATGATGTTATGATAGTAGGGATTTTTGGCATGGGGGGGATTGGTAAAACAACCATTTCCAAAGCTATTTATAATGAAATTGGTGAAAGCTTTGAGGCAAAAAGTTTCCTCACAAACATTAGAAAAGCTTGGGATGAAGAAAATGGCCAGGTTCTTTTGCAAGAACAACTTCTTTCAGACATTTTACAAACAAAAAAGATCACACTACATAGTGTTGAATTGGGAAAAGCTATAATAAAGGGAAGGCTTCGTCATAAAAGGGCACTTATTGTACTAGATGATGTAAATGATGTGGTCCAACTTGATGTTTTGTGTGGAAGCAGTGAATGGTTTGGTCCAGGCAGCAGAATAATCATCACTACTAGAGATGAGCATTTACTTAAGATCATTCAAGCTGATCATGTATATAGTATGAAAGAAATGGATGACAATGAATCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGTAAACCCGATAGAAGATTTCCTCGAACTCTCAACAAAGGTTATTGCTTACTCCGAAGGACTACCACTAGCTCTTGAAATCCTTGGCTCTTATTTGTTTGATAGGCCAGTACAAGCTTGGGAAAGTGTTTTAGACAGACTTAAAGGGCTTCCAAATGATCAAATACACAAGAAGCTAAAAATAAGCTATGATGGTTTGAGTAATGATGCGGAGAAAGAAATATTCTTGGATATATGTTGTTTTTTTATTGGAAGGGATAGAAATTATACCACACAAATATTAGATGGCTGTGGACTACATGCAGAAATTGGAATCACTCGACTCATAGAGTTGAGCCTTGTAAAAGTTGACAAAAATAACAAGCTTGACATGCATGGTTTGTTACGTGACATGGGAAGAGAGATCATTCGTGAAATGTCACCAGACGAGCCTGAGAAGCGTACCAGATTGTGGTTTCATAAAGACGTGGTTGAAGTGTTAACACATCATATGGGGACAAGGTGTATTAGGGGACTGGCTCTGAATTTGTCAAAAACCAAAACACTATCCTTTGATACAATTGCATTTAAGATGATGACGAGACTTAGATTGCTTCAACTTGGCCACGTAAAACTTGAGGGGAACTATGAATATCTATCAAAAGAGTTGCGGTGGCTTTGCTGGCATGGATTTCCTTTAAGTTGCATGCCAGATAATTTTCATCTAGAAAATTTAATTGCTATGGACTTGAAATACAGTCATCTCACCCACGTATGGGAGAAGTGCCAGTTGTTGGAGGGGTTGAAAATTCTCAATTTAAGTCATTCTTATTCCTTGAGGCAAACACCTGACTTTTCAAATTTGCCAAATCTTAAAAGGCTGATACTCAAAGATTGTCCACGTTTGTCTTCCATTCATCAATCCATTGGAGATCTAAAGTACCTTATTTTGTTGAATTTGAAGAATTGTAAAGATCTCACCAATTTGCCAAGTAGTTTATGTAATGTAAAATCATTGAAAACTCTCAATCTCTTTGGTTGTTCAAAGATTGACAAATTAGAAGGAGGTTTTGAGAAAATGGAATCTTTGACAACTCTATTGGCAAATGAAACTGCTATAACAGAAGTGCCTCGTTCTTTAGTAAGATCAAGAAGCATCAAATATATCTCATTATGTGGCTATGAAGGATTACCGGATGGTTTATTTTCACCTCTCATTTGGTCTTGGACATCCCCAACAAGTAGTCGAAGATTTCTTCATCAAGCATTTGCAAGCATGCCATTTTTATTGCATAATCTTTTTCATAACTTATCTAAACAAAGTAGTGGAAATTCGGAGACAGGACAAAGTGCATTCAAAATCTCATGCCCAAAAAGTGCAGCATTAATCGGTTTTTATGACCAAGTTCACAATGCAAGGGCTGAAAATTTCACGAGTTCCCTTACCATCCAAGTGGGAGGATTCAACAAAGTCGTTGATACACTTTTGAAGAGTATCTCAGAGGGGCGGACTAATGGAGGGCTTGACTATTCTCTTCCTGGAGACAATTATCCTCATTGGCTGGTTTTTGAAAATGAAGGACCCTCAGTTTCATTTACAGTTCCTCAAGTTTTTGGTCGTTGCTTAAATGGAATACTCCTGTACATTATTTATTCATCTCTTCAAGATTGCACGTCATCTTTAAATCCTATTGGTGTCATGATAAAGAATTTTACAAAGGCTACCATGGAGTTCTACAAGCGAGATGCTGCAATTTCTACTGGTGAAAAATGGCAGAATATAATATCTAATTTGGAGCCTGGAAATGAGGTGGATTTTATCGTAGATTTTTTACACAAATATATTGTGAAGAAGACTGCAATCTATCTCGTATATGGTGGAGAAACAAATAAGTGGAGAATAGTGTCACAAGGCTTCACTTAA	3189	0.3728	MVLIATRHKHILHDLNVKYVYEMKRIDNSESLELFSWNAFKHSSPRDGFVNLAKSIVTYCEGLPLVLEVLGSLLSCKTKPEWKSVLLKLKGIPTGQIQEKLKISCIEAFMDNGIRRGENIPSTLTQAIENSRMSIIVFSIDYTGSRWCLQELEKIIQCHRTTGHEVLPIFYGVQPSDVRKQIGSFGKALEGLVRRTSASEDKKFNWMRALHEAANLSGWYSGHYRTDAELIDHVIETVTLKLNDHMYLFVAHHPVGINSRMQEITHLLSGKSDDVMIVGIFGMGGIGKTTISKAIYNEIGESFEAKSFLTNIRKAWDEENGQVLLQEQLLSDILQTKKITLHSVELGKAIIKGRLRHKRALIVLDDVNDVVQLDVLCGSSEWFGPGSRIIITTRDEHLLKIIQADHVYSMKEMDDNESLELFSWHAFKQVNPIEDFLELSTKVIAYSEGLPLALEILGSYLFDRPVQAWESVLDRLKGLPNDQIHKKLKISYDGLSNDAEKEIFLDICCFFIGRDRNYTTQILDGCGLHAEIGITRLIELSLVKVDKNNKLDMHGLLRDMGREIIREMSPDEPEKRTRLWFHKDVVEVLTHHMGTRCIRGLALNLSKTKTLSFDTIAFKMMTRLRLLQLGHVKLEGNYEYLSKELRWLCWHGFPLSCMPDNFHLENLIAMDLKYSHLTHVWEKCQLLEGLKILNLSHSYSLRQTPDFSNLPNLKRLILKDCPRLSSIHQSIGDLKYLILLNLKNCKDLTNLPSSLCNVKSLKTLNLFGCSKIDKLEGGFEKMESLTTLLANETAITEVPRSLVRSRSIKYISLCGYEGLPDGLFSPLIWSWTSPTSSRRFLHQAFASMPFLLHNLFHNLSKQSSGNSETGQSAFKISCPKSAALIGFYDQVHNARAENFTSSLTIQVGGFNKVVDTLLKSISEGRTNGGLDYSLPGDNYPHWLVFENEGPSVSFTVPQVFGRCLNGILLYIIYSSLQDCTSSLNPIGVMIKNFTKATMEFYKRDAAISTGEKWQNIISNLEPGNEVDFIVDFLHKYIVKKTAIYLVYGGETNKWRIVSQGFT	1062

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g0726	1062	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	2	105	IPR044974	GO:0006952
	Prci12g0726	1062	Pfam	TIR domain	105	239	IPR000157	GO:0007165
	Prci12g0726	1062	Pfam	NB-ARC domain	2	95	IPR002182	GO:0043531
	Prci12g0726	1062	Pfam	NB-ARC domain	261	482	IPR002182	GO:0043531
	Prci12g0726	1062	SUPERFAMILY	Toll/Interleukin receptor TIR domain	101	219	IPR035897	-
	Prci12g0726	1062	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	244	507	IPR027417	-
	Prci12g0726	1062	ProSiteProfiles	TIR domain profile.	68	242	IPR000157	GO:0007165
	Prci12g0726	1062	Gene3D	Ribonuclease Inhibitor	589	841	IPR032675	-
	Prci12g0726	1062	Gene3D	-	412	496	IPR042197	-
	Prci12g0726	1062	Gene3D	-	248	408	IPR027417	-
	Prci12g0726	1062	SUPERFAMILY	L domain-like	569	824	-	-
	Prci12g0726	1062	SUPERFAMILY	"Winged helix" DNA-binding domain	483	589	IPR036390	-
	Prci12g0726	1062	PRINTS	Disease resistance protein signature	354	368	-	-
	Prci12g0726	1062	PRINTS	Disease resistance protein signature	447	461	-	-
	Prci12g0726	1062	PRINTS	Disease resistance protein signature	756	772	-	-
	Prci12g0726	1062	PRINTS	Disease resistance protein signature	277	292	-	-
	Prci12g0726	1062	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	104	IPR027417	-
	Prci12g0726	1062	SMART	till_3	45	216	IPR000157	GO:0007165
	Prci12g0726	1062	Gene3D	-	90	247	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g0726	Prci-Chr12	6729724	6738922	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g0726	115	802	WRKY Transcription Factor Family	AT4G12020	32.958	3.12e-88	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g0726	-		-	pcin:129288182	1917.51