Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0705 ATGCATTCGAGCCAGTTCGACGGTGCCACGGCCTTCTCCGGTGGTGGTTTTATGCCTTCTCAGGCAACTCAAGGCCCTGAACCTTCCTTTTCCTACTCCAAGAATCGTGATGCTCAGTCATTGCTTCCTCTGACGGTCAAGCAGATAAATGATGCATTTCAGTCCAGCGATGATAAGTCTAATATGATTATCGATGGCGTGGATGTTAATAATGTCACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGAAGGATTACTGATGTTACTTTTGTACTGGATGATGGGACTGGAAGGATTGAGTGTAGTAAATGGCTCCAGGAAGATGCAGACACGAATGAAGCGGAGGGTATCAGGGATGCAATGTATGTGCGCTTACATGGACACTTGAAAGGTTTTCAGGGCAAAAGGACCTTAAATGTATTCTCTTTTAGGCCTTTGAACGACTTTAACGAGATTGCAAGTCACTTCATTGATTGTATATACGTCCATCTCTATAATACCAGGATACGGAGTAGTGTGCCAAAACAGCAATCTATGAACAATTCTTTACCTATGAATCCCACGAGAGGTTATGAACCTGCCCCTCCAAATCAATTCTCTGGTCAGCACAACAACGGTCAGAAGAATGTTGAAGATATGGTCTTAGATATCTTGCATCTTCCCTCGAACAGTGTCAAAGAGGAGGGTGTCTCTCGGGACCTTATTGCACAGCATCTTGGAATTCCTTTGGATAAGCTCATGTTATCTATAAAAAACCTTATTGAGGAAGGCGCCATTTATGAAGCTATAACTGATCATTATAAGTCAATCATCAATGGTTGA 822 0.4294 MHSSQFDGATAFSGGGFMPSQATQGPEPSFSYSKNRDAQSLLPLTVKQINDAFQSSDDKSNMIIDGVDVNNVTLVGRVCNKAGRITDVTFVLDDGTGRIECSKWLQEDADTNEAEGIRDAMYVRLHGHLKGFQGKRTLNVFSFRPLNDFNEIASHFIDCIYVHLYNTRIRSSVPKQQSMNNSLPMNPTRGYEPAPPNQFSGQHNNGQKNVEDMVLDILHLPSNSVKEEGVSRDLIAQHLGIPLDKLMLSIKNLIEEGAIYEAITDHYKSIING 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0705 273 Pfam OB-fold nucleic acid binding domain 72 144 IPR004365 GO:0003676
Prci12g0705 273 PANTHER REPLICATION PROTEIN A-RELATED 5 270 IPR040260 -
Prci12g0705 273 MobiDBLite consensus disorder prediction 175 199 - -
Prci12g0705 273 MobiDBLite consensus disorder prediction 13 34 - -
Prci12g0705 273 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Prci12g0705 273 PIRSF RPA32 1 271 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci12g0705 273 Gene3D - 202 271 IPR036388 -
Prci12g0705 273 SUPERFAMILY "Winged helix" DNA-binding domain 205 269 IPR036390 -
Prci12g0705 273 Pfam Replication protein A C terminal 163 265 IPR014892 -
Prci12g0705 273 SUPERFAMILY Nucleic acid-binding proteins 41 168 IPR012340 -
Prci12g0705 273 CDD RPA2_DBD_D 71 164 - -
Prci12g0705 273 Gene3D - 33 168 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0705 Prci-Chr12 6677994 6682375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0705 3 270 Core DNA Replication Machinery Family AT2G24490 45.985 2.29e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0705 K10739 - qsa:O6P43_022320 412.535