Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci12g0704 | ATGCATTCGAGCCAGTTCGACGGTGCCACGGCCTTCTCCGGTGGTGGTTTTATGCCTTCTCAGGCAACTCAAGGCCCTGAACCTTCCTTTTCCTACTCCAAGAATCGTGATGCTCAGTCATTGCTTCCTCTGACGGTCAAGCAGATAAATGATGCATTTCAGTCCAGCGATGATAAGTCTAATATGATTATCGATGGCGTGGATGTTAATAATGTCACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGAAGGATTACTGATGTTACTTTTGTACTGGATGATGGGACTGGAAGGATTGAGTGTAGTAAATGGCTCCAGGAAGATGCAGACACGAATGAAGCGGAGGGTATCAGGCCTTTGAACGACTTTAACGAGATTGCAAGTCACTTCATTGATTGTATATACGTCCATCTCTATAATACCAGGATACGGAGTAGTGTGCCAAAACAGCAATCTATGAACAATTCTTTACCTATGAATCCCACGAGAGGTTATGAACCTGCCCCTCCAAATCAATTCTCTGGTCAGCACAACAACGGTCAGAAGAATGTTGAAGATATGGTCTTAGATATCTTGCATCTTCCCTCGAACAGTGTCAAAGAGGAGGGTGTCTCTCGGGACCTTATTGCACAGCATCTTGGAATTCCTTTGGATAAGCTCATGTTATCTATAAAAAACCTTATTGAGGAAGGCGCCATTTATGAAGCTATAACTGATCATTATAAGTCAATCATCAATGGTTGA | 744 | 0.4328 | MHSSQFDGATAFSGGGFMPSQATQGPEPSFSYSKNRDAQSLLPLTVKQINDAFQSSDDKSNMIIDGVDVNNVTLVGRVCNKAGRITDVTFVLDDGTGRIECSKWLQEDADTNEAEGIRPLNDFNEIASHFIDCIYVHLYNTRIRSSVPKQQSMNNSLPMNPTRGYEPAPPNQFSGQHNNGQKNVEDMVLDILHLPSNSVKEEGVSRDLIAQHLGIPLDKLMLSIKNLIEEGAIYEAITDHYKSIING | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci12g0704 | 247 | SUPERFAMILY | Nucleic acid-binding proteins | 41 | 142 | IPR012340 | - | |
| Prci12g0704 | 247 | Gene3D | - | 38 | 144 | IPR012340 | - | |
| Prci12g0704 | 247 | PANTHER | REPLICATION PROTEIN A-RELATED | 114 | 244 | IPR040260 | - | |
| Prci12g0704 | 247 | Gene3D | - | 176 | 245 | IPR036388 | - | |
| Prci12g0704 | 247 | MobiDBLite | consensus disorder prediction | 13 | 34 | - | - | |
| Prci12g0704 | 247 | MobiDBLite | consensus disorder prediction | 149 | 172 | - | - | |
| Prci12g0704 | 247 | SUPERFAMILY | "Winged helix" DNA-binding domain | 179 | 244 | IPR036390 | - | |
| Prci12g0704 | 247 | Pfam | Replication protein A C terminal | 137 | 239 | IPR014892 | - | |
| Prci12g0704 | 247 | PIRSF | RPA32 | 113 | 245 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Prci12g0704 | 247 | PIRSF | RPA32 | 1 | 116 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Prci12g0704 | 247 | CDD | RPA2_DBD_D | 71 | 138 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci12g0704 | Prci-Chr12 | 6677991 | 6682375 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci12g0704 | 3 | 244 | Core DNA Replication Machinery Family | AT2G24490 | 39.416 | 1.31e-59 | 188 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci12g0704 | K10739 | - | qsa:O6P43_022320 | 354.369 |