LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g0693	ATGGATGAGCACTTTACGAGAGTGCGACCAAAGAACCCGTCAAGCGAAGCTCTTGAAAGATGGAGGAAGCTATGCGGCATAGTGAAGAACCCCAAACGACGCTTTCGTTTCACCGCCAATCTCGCACATAGGGCCCGGTATGATGTGTTCTTGAGCTTCAGAGGCGAAGACACTAGAGCGACTTTCACCTCACATCTCGACGCCGCTTTAAGGAACGCTGGGATTCTCGTTTTCAAAGATGATGCGGACCTTCCTAGAGGGAATGCAATCTCAAGTGAATTGTCACGAGGAATTGAACTTTCTACCATTTCAATCATTATCTTCTCCAAAGAATATGCTGGTTCTAGATGGTGCCTCAACGAGCTCTCACGAATCATGGAGCTTCACAGAGCACAGGGTCGAGTTGTTCTGCCTGTGTTCTATGGGGTGGATCCTTCTGAAGTTCGTAATCAAATCTCTGGTTTTGGAGAAGCGTTTCAAGATCTAATACAAAGAAGTTCACTCACGGAAGAAGAAGTGTTGAGGTGGAGAACAGCTCTCCGTGAAGCCGGGGGCATTGCAGGGCTTGTTGTGCTCAATTCCAGGAATGAAAGTGAAGATATCAAGAATATCGTTGAGCATGTCAATAAAATATTGGACAAGAAAGACTTGTTTATTGCTGACCATCCTGTTGGAGTGGATTCTCGTCTACAGGATTTGATTAAAGCATCAGAAAGCCATTCATCAAATGATGTTCTCTTGCTAGGGATATGGGGAATGGGCGGTATAGGTAAAACAACAATTGCCAAATCCATTTATAATGAAATTGGTCGAACATTTGAGAGTAGAAGTTTTCTTTCAAATATTAGGGAAGTTTGGGAGAGAGATAATGGTCCAATTAACTTACAGCAGCAACTTCTTTTAGAAATTTGTAAAACAACAAAGATGGAAATATTTAGCATTGATTTTGGAAAAGTCAAATTGAAGGAAAGTCTTTGCCATAAGAGAGCACTTGTTGTGCTTGATGATGTGAATAAGGATGAGCAACTGAATGCTTTATTTGGAAGTCGTGAATGGTTTGCTCCAGGAAGTAGAGTAATTGTCACAACTAGAGATAAGCATTTGCTCAATGTTCTTAAAGTGAACCATGTATATGAAATGGAAAAGATGGACCTGAGTGAATCTATTGAGCTTTTCAGTTGGCATGCTTTTAAGCAACCAAGTCCTAGAAAGGGATTCATTGAACTTTCTAGAAATGTAGTTGCTTATTCTGGAGGACTGCCACTAGCTCTTCAAATCCTTGGTTCCTATTTATGTGATAGGGAAGTGAGAGAGTGGAAGAGTGTACTAGAGAAACTAAAAAAAATCCCCAATGATGAGATACAAAAGAAGCTAAAAATAAGTTTTGATGGGTTAAGTGATGACACGGTGAAAGAAATCTTCCTTGATGTATCTTGCTTCTTTATTGGAATGGATAGGAGTGATGTCACAAAGATATTGGACAGTAGCAGACTATTTCCAGACATTGGAATAAGTGTCCTTGTGGAGCGGAGCCTTGTAACTATTGATGAGAAGAACAAGCTTGGCATGCATGATTTGCTGCGAGATATGGGGAGAGAAATAATCCGAGAACGATCACCTAAAGAGCTTGGAAAGCGTAGTAGGTTATGGTCTCATGAAGATGTGCTTGATGTATTATCAAAACAAACTGGTACAGAATTTGTTGAGGGGCTAGCTTTGAATCTGTCGCAAACCAATAAAGATTATTTTTCTACCAAAGCATTTAAGAAGATGAAGACACTCAGATTGCTCTGCCTTGGTAATGTGGAGCTTGATGGAGACTACAAATACATTAGTAGAGATCTCAGATGGCTTTGTTGGTATGGGTTTCCTTTGAGAAACATCCCTGCCAACTTATATCAGAAAAATTTAGTTGCAATTGAGTTAAAATATAGTAGCCTCAAACAAGTTTGGAGGGAACCCCAGTTATTGGAGAGGCTGAAAATCCTGAATTTTAGTCACTCCCCTTTCTTGATGCAAACTCCTGACTTCTCAAAACTACCAAATCTTGAAAAGTTGATTCTTAAAAATTGTCCAGATTTGTCCATTGTTCATCCTACCATTGGACATGCCAATAAACTGCTTCTAATAAACTTGAAGGATTGTACTAACCTCCGCACTCTCCCGAGAAGTATCTATAATTTAAAATCCCTAAAAACTCTCATTCTGTCTGGTTGTGCAAGGATTGAAAAGTTAGAAGAAGACATAGAGCAAATGGATTCCTTGACAACTCTGATTGCTGATGACACTGCAATAACACAAGTGCCTCTTTCTTTGACTAGGTTAAAAAGCATTGGCTATATATCTCTTTGTGGCTATAGGGGATTGTCACGTGATGTGCTTCCTACTCTCATTTGGTCAAGGATGTCCCCAACAAATAATCCTTTATCTCTAATTCCAACACATGTGGGCATGCCAATTTCCTCGGATATGTTGAATAGCAATATGGGTGGTCTTTCATTTATTTCTACTAACTTGGCAAAACTACAAAGCCTTTTGTTGGAAATCATATCACAGAATGACCCTGAAATGATTCGAGGTGCTGCCAAAATTTTGGGGTCCTTTTATGCCAGAATTTGCATGGACATGGCAACAATATCAAATACTTCAAAAATCTTAGAGACTGAATCTTCTGTGTTATCTAGTCGTGATAGTGAGGTTCACATCTCAAGATCAGAAAATTGTTTGAGACATCTTCTAATTCAAATAGCAAAGAATGACCAAGTCACTGCTACTCTTCTAGAGAATATTTCACAGGTGATCTGGAAAAGATGGCTTTTGAATCTTTTATTAGCATGA	2838	0.3946	MDEHFTRVRPKNPSSEALERWRKLCGIVKNPKRRFRFTANLAHRARYDVFLSFRGEDTRATFTSHLDAALRNAGILVFKDDADLPRGNAISSELSRGIELSTISIIIFSKEYAGSRWCLNELSRIMELHRAQGRVVLPVFYGVDPSEVRNQISGFGEAFQDLIQRSSLTEEEVLRWRTALREAGGIAGLVVLNSRNESEDIKNIVEHVNKILDKKDLFIADHPVGVDSRLQDLIKASESHSSNDVLLLGIWGMGGIGKTTIAKSIYNEIGRTFESRSFLSNIREVWERDNGPINLQQQLLLEICKTTKMEIFSIDFGKVKLKESLCHKRALVVLDDVNKDEQLNALFGSREWFAPGSRVIVTTRDKHLLNVLKVNHVYEMEKMDLSESIELFSWHAFKQPSPRKGFIELSRNVVAYSGGLPLALQILGSYLCDREVREWKSVLEKLKKIPNDEIQKKLKISFDGLSDDTVKEIFLDVSCFFIGMDRSDVTKILDSSRLFPDIGISVLVERSLVTIDEKNKLGMHDLLRDMGREIIRERSPKELGKRSRLWSHEDVLDVLSKQTGTEFVEGLALNLSQTNKDYFSTKAFKKMKTLRLLCLGNVELDGDYKYISRDLRWLCWYGFPLRNIPANLYQKNLVAIELKYSSLKQVWREPQLLERLKILNFSHSPFLMQTPDFSKLPNLEKLILKNCPDLSIVHPTIGHANKLLLINLKDCTNLRTLPRSIYNLKSLKTLILSGCARIEKLEEDIEQMDSLTTLIADDTAITQVPLSLTRLKSIGYISLCGYRGLSRDVLPTLIWSRMSPTNNPLSLIPTHVGMPISSDMLNSNMGGLSFISTNLAKLQSLLLEIISQNDPEMIRGAAKILGSFYARICMDMATISNTSKILETESSVLSSRDSEVHISRSENCLRHLLIQIAKNDQVTATLLENISQVIWKRWLLNLLLA	945

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g0693	945	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	47	789	IPR044974	GO:0006952
	Prci12g0693	945	Pfam	NB-ARC domain	241	454	IPR002182	GO:0043531
	Prci12g0693	945	SMART	till_3	46	186	IPR000157	GO:0007165
	Prci12g0693	945	Pfam	TIR domain	47	210	IPR000157	GO:0007165
	Prci12g0693	945	SUPERFAMILY	L domain-like	536	846	-	-
	Prci12g0693	945	FunFam	Disease resistance protein (TIR-NBS-LRR class)	43	214	-	-
	Prci12g0693	945	Pfam	Ca2+-ATPase N terminal autoinhibitory domain	2	46	IPR024750	GO:0005516
	Prci12g0693	945	Gene3D	-	44	209	IPR035897	-
	Prci12g0693	945	SUPERFAMILY	"Winged helix" DNA-binding domain	452	559	IPR036390	-
	Prci12g0693	945	SUPERFAMILY	Toll/Interleukin receptor TIR domain	43	188	IPR035897	-
	Prci12g0693	945	Gene3D	-	383	466	IPR042197	-
	Prci12g0693	945	PRINTS	Disease resistance protein signature	324	338	-	-
	Prci12g0693	945	PRINTS	Disease resistance protein signature	247	262	-	-
	Prci12g0693	945	PRINTS	Disease resistance protein signature	726	742	-	-
	Prci12g0693	945	PRINTS	Disease resistance protein signature	417	431	-	-
	Prci12g0693	945	ProSiteProfiles	TIR domain profile.	45	212	IPR000157	GO:0007165
	Prci12g0693	945	Gene3D	-	210	378	IPR027417	-
	Prci12g0693	945	Gene3D	Ribonuclease Inhibitor	560	864	IPR032675	-
	Prci12g0693	945	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	476	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g0693	Prci-Chr12	6594451	6602557	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g0693	20	799	WRKY Transcription Factor Family	AT4G12020	30.424	6.30e-83	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g0693	-		-	pcin:129288835	1829.68