Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0671 ATGATACCTAACAATTATTCTGCTTTTGAATCGCCATTACTTCAGCAACACAATGATCCTTCCTCTGCGTCTCTCATGAATAATAATAATAATTCCTTCTTCAAGACCACCTCTACTTCTAACCGTATCGGCGACGTCACTGCTTTGCCGGAACATGGCGTTCGTTGTAACTCCGGCGGTACGGTGTTTTCCAGTGAACGGCATGAAAACACCATGAAAGCAGGTGGTAGTGGTGGGGCTGATGTTAACACTGCTGCAGATCAGTCTGTGGCAAGTGAAGGGAACGCGCCACCTAGATGGAGGAGTTACAGAGGCGTGAGGCGTCGGCCGTGGGGGAAGTTTGCGGCGGAGATCCGGGACCCAGAGAGGAACGGCGCGAGAACGTGGTTAGGGACTTACGAGAGGGAACAGGACGCAGCTTTGGCTTATGACAGAGCCGCTTTCAAGATGAAGGGTAGAAAAGCAAAGCTCAATTTTCCTCACCTAATTGGGTCGGAACCACCCCCGCCGGAGCCGACAAGAGTAGTCGCCCATCAGAAGCGGCGACACTCGCCGGAACCTTCATCACGGTCGCCAGAGAAGGATGATGATGGATCTCAAGGTTCAAGTAAGAAGAAGAGCCTGGTTGGTCTATTGAATAAGTTAGCAACCAATAGAAGCCACATTAGAAGCTTGGAATGGTCATGTTGA 690 0.5058 MIPNNYSAFESPLLQQHNDPSSASLMNNNNNSFFKTTSTSNRIGDVTALPEHGVRCNSGGTVFSSERHENTMKAGGSGGADVNTAADQSVASEGNAPPRWRSYRGVRRRPWGKFAAEIRDPERNGARTWLGTYEREQDAALAYDRAAFKMKGRKAKLNFPHLIGSEPPPPEPTRVVAHQKRRHSPEPSSRSPEKDDDGSQGSSKKKSLVGLLNKLATNRSHIRSLEWSC 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0671 229 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 MobiDBLite consensus disorder prediction 175 202 - -
Prci12g0671 229 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Prci12g0671 229 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 CDD AP2 103 162 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 PANTHER DNA-BINDING DOMAIN 55 199 IPR044808 GO:0003700|GO:0009873
Prci12g0671 229 MobiDBLite consensus disorder prediction 159 212 - -
Prci12g0671 229 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Prci12g0671 229 MobiDBLite consensus disorder prediction 1 30 - -
Prci12g0671 229 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Prci12g0671 229 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0671 Prci-Chr12 6376439 6377817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0671 103 188 AP2-EREBP Transcription Factor Family AT2G44840 72.093 5.27e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g0671 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0671 K09286 - pcin:129296372 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g0671 12 6376439 6377817 Prci12g0671 12 6376439 6377817 ECH