Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0669 ATGATCCCTAATCGTTCTCCTTTTGAATCAGTTCAACATCACCTGATTGAAGATGATCCTAATTCCTCCACGACTCTCATGAATAATGGCTTCTTCGCGGCGGCCGGCAACCCTACTTCCAACTTGAACTGCTACACGGCTTCGCTGGATCATGGTGCTAGTAGCTCTACTGGATCTGTGGCGCGTGAGGAGAACGCGCCACCTACATGGAGGAATCTGAACTACGACGCTGCTTTGCCGGAGGAGGGTGTTAGTGACTCCGGTGGTATGTCATTTTCGGGCGGGAATAATGACGACGGTATGAATTCAGGTGGTTATGATGATGATAAGGTTACCGGTAATAACACAGGATCTGTCGCATGTGAAAAGAACGCGCCGCCTCGATTGAGGAATTACCGAGGCGTGAGGCGGCGGCCATGGGTAAGTTTCGCAGCGGAGATCCGGGACCCGAAGAGGAACGGCGCAAGGACATGGCTCGGAACCTATGAGAGCGAGGAGGACGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGCATGGCAGAAAAGCCAAGCTCAATTTCCCACACCTTATTGGATCGGAGTCGCCGCCGGTGCCGGCAAGAGTAGTCATTGGAGAGAAGCAGCGCAGCTCGCCGGAACCTTCGTCGCCGTCTAACTGTACGGCTGAGGATGATGGATCTCAAGGATCAAGTAAGAAGAAAAGCCTGGCAGGTCTATTGAACAAGTTAGCAACAAATAGAAGTCATATCAGATTCTGA 762 0.5144 MIPNRSPFESVQHHLIEDDPNSSTTLMNNGFFAAAGNPTSNLNCYTASLDHGASSSTGSVAREENAPPTWRNLNYDAALPEEGVSDSGGMSFSGGNNDDGMNSGGYDDDKVTGNNTGSVACEKNAPPRLRNYRGVRRRPWVSFAAEIRDPKRNGARTWLGTYESEEDAALAYDRAAFKMHGRKAKLNFPHLIGSESPPVPARVVIGEKQRSSPEPSSPSNCTAEDDGSQGSSKKKSLAGLLNKLATNRSHIRF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0669 253 PRINTS Ethylene responsive element binding protein signature 171 191 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 MobiDBLite consensus disorder prediction 84 124 - -
Prci12g0669 253 MobiDBLite consensus disorder prediction 210 236 - -
Prci12g0669 253 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 PANTHER DNA-BINDING DOMAIN 91 229 IPR044808 GO:0003700|GO:0009873
Prci12g0669 253 FunFam Ethylene-responsive transcription factor 2 130 190 - -
Prci12g0669 253 SUPERFAMILY DNA-binding domain 131 190 IPR016177 GO:0003677
Prci12g0669 253 CDD AP2 131 191 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Prci12g0669 253 MobiDBLite consensus disorder prediction 191 253 - -
Prci12g0669 253 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0669 Prci-Chr12 6348919 6349891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0669 98 224 AP2-EREBP Transcription Factor Family AT2G44840 51.020 2.08e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci12g0669 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0669 K09286 - pcin:129296372 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g0669 12 6348919 6349891 Prci12g0669 12 6348919 6349891 ECH