Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0662 ATGGCTTCTCAATCCCTGAGAAAACGTAAAATGAAGCCTTCATTCTTCAAGGTCTTGATGAAAGATTTCTCTACTCGCCTGAAAATCCCACCAGCTTTTATGAAGGAGTTTGGGAAACACTTGGCAAAGAAAGCAACGCTTGAGACTGATTATGATAAATCATGGGAAGTTGGAGTGGAAAAACTTGGAAACAAATTTTATTTAAATAATGGATGGAGTAAATTTGTGGAAGACAATAATTTGGAAACTGGAGATTTCTTGGTGTTAAAGTATTTTGCACATTATTCTTTGTTTAAGGTCAAAATCTATGGTAAAACTTGCTGTGAGAAGAAATTGAACGTGGTTGGCAAAGGCAAAGATCAGATAAATGAACAAGGAAGAAGAAAAAGAAAGAGGAATGAAGAAGAAGATGATAATAACAATGTAAAGAGGAACGAGACTGAATTTGTTCGATCCAAAGCTTTCAAAAGTGATGTAATTAAAATTGATCCTGACTCTTCTTCGTCTTCTGATGATGACGATGAAGAAATTAGAAAAGGAAGTATCCAGAAAAGAAAAGCACAAACTGTTTGGCTGAAGACGAATATGCCTCAAGATTATCAAAACCATATAGAATTCAAATCTGAGAATCCCTTCTTTCAACTTCAGCTCAAGTTTTCAACTACCAATTTTTATCTGTACATACCCAAAGGTTTTTTCATGGAACATTTGAAGGAAAGCAAAAGGATCAAGTTAAAGATATGTGAAAAAACTTGGGATATGGAGATTCATGTGTATGAACATGAACGTGGTACAAAGCGAACACAAGGAGCCAGAGTGACTCAGGGATGGAAGAGAGCAGTGAAAGAACAGAATTTGGAAATGGACGATGTTTGCTTCTTTGAAATGATAAAAAAGTTTGATACTGATTTTGTGTTTCGTGTTCACGTTTACAGGTGGGATGATCGGAAAGCAAAGTTTTCCAAGATAATTTAG 975 0.3528 MASQSLRKRKMKPSFFKVLMKDFSTRLKIPPAFMKEFGKHLAKKATLETDYDKSWEVGVEKLGNKFYLNNGWSKFVEDNNLETGDFLVLKYFAHYSLFKVKIYGKTCCEKKLNVVGKGKDQINEQGRRKRKRNEEEDDNNNVKRNETEFVRSKAFKSDVIKIDPDSSSSSDDDDEEIRKGSIQKRKAQTVWLKTNMPQDYQNHIEFKSENPFFQLQLKFSTTNFYLYIPKGFFMEHLKESKRIKLKICEKTWDMEIHVYEHERGTKRTQGARVTQGWKRAVKEQNLEMDDVCFFEMIKKFDTDFVFRVHVYRWDDRKAKFSKII 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0662 324 Gene3D - 193 315 IPR015300 -
Prci12g0662 324 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Prci12g0662 324 MobiDBLite consensus disorder prediction 119 143 - -
Prci12g0662 324 SUPERFAMILY DNA-binding pseudobarrel domain 206 314 IPR015300 -
Prci12g0662 324 ProSiteProfiles B3 DNA-binding domain profile. 211 314 IPR003340 GO:0003677
Prci12g0662 324 Gene3D - 6 108 IPR015300 -
Prci12g0662 324 PANTHER B3 DOMAIN-CONTAINING 10 299 - -
Prci12g0662 324 CDD B3_DNA 211 312 IPR003340 GO:0003677
Prci12g0662 324 Pfam B3 DNA binding domain 221 311 IPR003340 GO:0003677
Prci12g0662 324 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Prci12g0662 324 SUPERFAMILY DNA-binding pseudobarrel domain 13 112 IPR015300 -
Prci12g0662 324 MobiDBLite consensus disorder prediction 161 181 - -
Prci12g0662 324 SMART B3_2 213 310 IPR003340 GO:0003677
Prci12g0662 324 SMART B3_2 15 106 IPR003340 GO:0003677
Prci12g0662 324 CDD B3_DNA 13 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0662 Prci-Chr12 6163606 6165949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0662 12 315 B3 DNA Binding Superfamily AT3G18990 25.284 2.44e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci12g0662 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0662 - - pcin:129289018 626.706