Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0567 ATGGTGACAGGTGGAGGTTCTCTGTCAGCGGCGGCTCAACAAGCTGAGCAACTGAAACTCCTCGGAAACTTTTACTTCAAGAAAGAACATTTTGGGGCCGCCATCGATGCTTATACCGAGGCAATCACTCTGTGCCCTAACATTCCGGTTTATTGGACGAATCGTGCTCTGTGTCACCGTAAGCGCAATGACTGGGCTAGAGTAGAGGAAGACAGTCGGAGAGCTATTCAACTGGACAACAAGTCAGTCAAGGGTCATTACTTCTTGGGGCTTGCATTGCTGCAGAGACAAGAATATACCGAAGGGATCAGAGAATTGGAAAAGGCTTTGGATCTTGGGAGGGGTGCCGATCCTAATGGCTATATGGTAGAGGAGATCTGGCAGGAGCTTGCAAAAGCAAAATACATTGACTGGGAAAGTGCATTTGTCAAGAGATCATGGGAATTGCAGCATTTGAAGGAAGCTTGTGAGTTAGCTCTAACAGAAAAGCATTTTCGTGACGTCTCTCAAATGGAAGGGTTTATTGATCAAGCTGAAGCTGAGCACTCAAAACAACTTCTTGCTTTAGAGAGAGTTTTCCGTGGAGCTGCAGAGGCTGACATGCATACTGAGGTCCCAGATTACTTATGCTGTAGAATCACTCTCGATATCCTTCGAGATCCTATAATTACTCCAAGTGGACATACATATGAAAGGGCAGTAATTCTTCAACACCTTCAAAAGAGCAAGTCTGATCCAGTTACGCGGGAACCACTTCATCCATCGCAGCTTGTACCAAACTTGGCTATAAAGGAAGCAGTTCAGGCATTCTTGGACAAACATGGGTGGGCATACAAGCCATAG 843 0.4591 MVTGGGSLSAAAQQAEQLKLLGNFYFKKEHFGAAIDAYTEAITLCPNIPVYWTNRALCHRKRNDWARVEEDSRRAIQLDNKSVKGHYFLGLALLQRQEYTEGIRELEKALDLGRGADPNGYMVEEIWQELAKAKYIDWESAFVKRSWELQHLKEACELALTEKHFRDVSQMEGFIDQAEAEHSKQLLALERVFRGAAEADMHTEVPDYLCCRITLDILRDPIITPSGHTYERAVILQHLQKSKSDPVTREPLHPSQLVPNLAIKEAVQAFLDKHGWAYKP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0567 280 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Prci12g0567 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 277 IPR013083 -
Prci12g0567 280 CDD RING-Ubox_CHIP 205 274 IPR045202 -
Prci12g0567 280 ProSiteProfiles U-box domain profile. 204 277 IPR003613 GO:0004842|GO:0016567
Prci12g0567 280 Pfam U-box domain 205 276 IPR003613 GO:0004842|GO:0016567
Prci12g0567 280 Pfam Tetratricopeptide repeat 20 47 IPR019734 GO:0005515
Prci12g0567 280 SMART tpr_5 83 116 IPR019734 GO:0005515
Prci12g0567 280 SMART tpr_5 49 82 IPR019734 GO:0005515
Prci12g0567 280 SMART tpr_5 15 48 IPR019734 GO:0005515
Prci12g0567 280 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Prci12g0567 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
Prci12g0567 280 SMART Ubox_2 208 270 IPR003613 GO:0004842|GO:0016567
Prci12g0567 280 SUPERFAMILY RING/U-box 198 278 - -
Prci12g0567 280 SUPERFAMILY TPR-like 13 131 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0567 Prci-Chr12 5064697 5068024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0567 1 279 U-box Gene Family AT3G07370 63.571 1.13e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0567 K09561 - gmx:100796519 434.106