Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0565 ATGTCAAGCAACTATTGGTCTTCACCAACCAATAATCATGACATTCTTGTTCAGTTCTTCCCAACTGTTAACCACTTTTCTTCTTCTCCTTCCCGCGAAGCCTTGAGCTTGAAACTTCTGGTCAACCCTCTCGTTTCGTTACATTCGCTGATTCGCTCTTCGTCTTCCGTACTTTCCAGCTCTGTTTACGCAAGCTTGTTTATACATACTGGAGGCAAAATGGTGGAATATGGAAGTTCTGATTTCTCTTCGGCGGTTCAACGTGGGAATAGACTGATCACCCAGGCCTGCTCATTCTACTCCAGACAAGATTACCGGGCTGCCGTCACGTATTGTTCCCAGGCAATAATTACGTGCCCCCACAATCCGTTTTGTTGGCTGAATCGTGCTGCGTGTAACTTCATGCTCGGTGAATGGGATAGAGTAGAGATAGATTGCCGCACAGCTATTCAACTCGACAACAAGATTGCCCAGGCCCATTATTCATTGGGGCTTGCATGGGTGAATAAACGAAAATATACCGAGGGGATCAGAGAATTGGAGAGGGCTTTTGATCTTGAGAGGGAGGCTGATCCTAATTATGGCCTCATGGTTGAGCGCACGTGGCAGGCGCTTGTTTACGCAAAATACACTGAGTGGCAAGATGCGTCTGACAGGAGATCACAGGAACTGCATAATTTGAAAGAAGCTTGTGAGTCTGCCCTTAATGAAAAACATCAATCTCAAAGGAATGGGCTTACAGCTGAAGCTGAAGCTGCCCACTCACAACAACTTGCTGCTTTAGAAACCGTTTTCCGTGAAGTTGCAGAGCCTGACACGCCTTCTGATATCCCAACTTACTTATGCTGTCCAATCAACCGTCATATTTTTCGAGATCCTGTGATTACTCCAAGTGGGCATACATACGAGAGAAAAGCGATTCTTCAACACCTTCAGACGAGTATTTTGGATCCGATCACGGCGCGACCACTTCGGGCAACAGAGCTTGTACCAAACTTGGCAATCAAGGAACAAGTTCAGGCATTCTTGGACAAAAATGGATGGGCATATTCAAGCTATTTTGCTAACTGGTAA 1074 0.459 MSSNYWSSPTNNHDILVQFFPTVNHFSSSPSREALSLKLLVNPLVSLHSLIRSSSSVLSSSVYASLFIHTGGKMVEYGSSDFSSAVQRGNRLITQACSFYSRQDYRAAVTYCSQAIITCPHNPFCWLNRAACNFMLGEWDRVEIDCRTAIQLDNKIAQAHYSLGLAWVNKRKYTEGIRELERAFDLEREADPNYGLMVERTWQALVYAKYTEWQDASDRRSQELHNLKEACESALNEKHQSQRNGLTAEAEAAHSQQLAALETVFREVAEPDTPSDIPTYLCCPINRHIFRDPVITPSGHTYERKAILQHLQTSILDPITARPLRATELVPNLAIKEQVQAFLDKNGWAYSSYFANW 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0565 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 349 IPR013083 -
Prci12g0565 357 SUPERFAMILY TPR-like 92 216 IPR011990 GO:0005515
Prci12g0565 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 83 351 IPR045200 GO:0000209|GO:0061630
Prci12g0565 357 SMART tpr_5 123 156 IPR019734 GO:0005515
Prci12g0565 357 SMART tpr_5 157 190 IPR019734 GO:0005515
Prci12g0565 357 SMART tpr_5 89 122 IPR019734 GO:0005515
Prci12g0565 357 SUPERFAMILY RING/U-box 271 351 - -
Prci12g0565 357 Coils Coil 224 244 - -
Prci12g0565 357 ProSiteProfiles U-box domain profile. 276 349 IPR003613 GO:0004842|GO:0016567
Prci12g0565 357 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Prci12g0565 357 Gene3D Tetratricopeptide repeat domain 80 260 IPR011990 GO:0005515
Prci12g0565 357 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Prci12g0565 357 SMART Ubox_2 280 342 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0565 Prci-Chr12 5054950 5058412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0565 89 351 U-box Gene Family AT3G07370 46.816 3.37e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0565 K09561 - pvy:116113652 271.166