Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0564 ATGGCGAAGCCGGGAGTGTTGGAATCTGATCCAACGGTGACGGCCAAGGCAATGGAGCTCAAGAAGGAGTTGCAGAGATTGGTGAAGTCAATTGTTGAAGATGAGGATCATTGCGGCGTTGAGACCTTCGATGCGACCATGGAGACGCTGTCGTTGCTGAAAGAGCTGAAGTTCAGCAAGAGATCAACGTCGTCGTCGTCGTCGTCTTCGTCGCTGTCTTTGAAACTCCGCCACAAAACCGGGTTGAATTGCCCTGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTGATTTTGGCTTCTGGTCAGACATATGACAGAACGTTCATCCAAAAATGGCTCAAAGCCGGGAACCAAACATGCCCTCGGACACAGCAAGTCCTCTCACACTCTGGTCTCACTCCTAATTACCTAATAAGGGAAATGATTGAGCAATGGTGTAGAAGCCAAGGGCTTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGTTATAGTAGAACCAGAGCATGGTCATTTTCTTTCTTTGCTTGAGAAAGTGTCTTCATCAGCACTTTCTGAACAGAAAGCCGCTGCGAAGGAGCTCCGGATTCTAACGAAGAAAATGCCCTGTTTCCGTGTATTTTTCAGTGAGTTCCCAGACGCCATTCCCAAATTGCTTAAACCAATCTGTGGGAGTCACTCCCTGGGTAATGTTCACCCTGACCTCCAAGAAGATGTTATCACAATACTCCTCAATATCTCTATCCATGACAACAACAAGAAGATTGTAGCTGAAACTCCCATGGTAATTCCTCTCCTCATGAGGGCATTGAGATCAGGAACAATTGCAACCCGAAGCAATGCCGCCGCAGCCCTTTTCACTTTGTCAGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCTCTTATTGACCTTTTAGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTTACCTTATGTGTCCTTCAAGAGAACAAGGCAAGGGCAGTGAAGGATGGCACAGTGAAGGTGATTGTAAAGAAGATAATTGACCAGGTTTATGTCGATGAACTCCTTACCATTCTCGCGCTGCTCTCAAGTCACCAGAAGGCAGTTCAGGACATGGGGGAGCTCGGAGCTGTTCCTAGCTTGTTGAGCTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAGACTATCTGTCTGTATGACAGATCCAGGTTGAAGGAAATAAAGGAAGAAGAGAACAGACATAGAACAATCTCCGAGCTTGCTCAAAATGGAACTTCAAGGGCTAAGAGGAAGGCTGCTGGAATTCTTGAGAGACTAAACAGGGTTGTCAATATTACACACACTGCATAA 1410 0.4546 MAKPGVLESDPTVTAKAMELKKELQRLVKSIVEDEDHCGVETFDATMETLSLLKELKFSKRSTSSSSSSSSLSLKLRHKTGLNCPEEFKCPLSKQLMRDPVILASGQTYDRTFIQKWLKAGNQTCPRTQQVLSHSGLTPNYLIREMIEQWCRSQGLEFSNHVHYINEEVIVEPEHGHFLSLLEKVSSSALSEQKAAAKELRILTKKMPCFRVFFSEFPDAIPKLLKPICGSHSLGNVHPDLQEDVITILLNISIHDNNKKIVAETPMVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIIDQVYVDELLTILALLSSHQKAVQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLYDRSRLKEIKEEENRHRTISELAQNGTSRAKRKAAGILERLNRVVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0564 469 Gene3D - 218 359 IPR011989 -
Prci12g0564 469 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Prci12g0564 469 FunFam RING-type E3 ubiquitin transferase 83 157 - -
Prci12g0564 469 SUPERFAMILY RING/U-box 82 160 - -
Prci12g0564 469 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Prci12g0564 469 Pfam U-box domain 85 153 IPR003613 GO:0004842|GO:0016567
Prci12g0564 469 SUPERFAMILY ARM repeat 175 459 IPR016024 -
Prci12g0564 469 Gene3D - 360 463 IPR011989 -
Prci12g0564 469 CDD RING-Ubox_PUB 85 137 IPR045210 -
Prci12g0564 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Prci12g0564 469 PANTHER U BOX DOMAIN-CONTAINING 19 459 - -
Prci12g0564 469 FunFam RING-type E3 ubiquitin transferase 168 465 - -
Prci12g0564 469 SMART arm_5 255 296 IPR000225 GO:0005515
Prci12g0564 469 SMART arm_5 297 337 IPR000225 GO:0005515
Prci12g0564 469 SMART arm_5 377 418 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0564 Prci-Chr12 5049151 5053605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0564 146 469 U-box Gene Family AT3G07360 61.212 4.98e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0564 - - pcin:129287872 876.7