Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0555 ATGGAGAACGAATTCTTCCTCAATGCCGCTTCTTTTCACTTCGAACCTCCTCCTCCTTCTTCAATGCCCACGTGGCAATCACTGTCATCCGCCATGGATGTTCAAGCTTCCGTCCTCAATTGCTCTTCCGAGCAGCCCCGAGATTGCTTTTACAACAACACCAAATGGGATAAGTCAACGGATCATCATGGTCTTCAATTCGATTCTGCTCTCAGCTCCATCGTTTCTTCCCCCGTGGCGTCCAATTCCAATGTTATGCCCAGTAACGAGAATTTCACGATCAGGGAATTGATAGGAAAATTGGGGAACATTGGTGCATCTCCTTACATTAATGGCGGTAATAGCACTGATACTTCGTGTTATAGTACTCCCTTGAGCTCACCTCCGAAGATGAACATGATGAACCAGTTGCTGAAAGAGAACTTGCCCAGTTTAGGTAAATCGATGGTTTTGAATTCTAATGTTGCAGAATTCTCATCTGATCCTGGTTTTGCGGAGAGAGCTGCCAAGTTTTCTTGCTTTGGAAGCAGGAGCTTCAATGGCAGAACATGCCAACTGGGCAGGAACAACGGTCAGTTGTCTGTAAGATCTACTCCATCGATGGAGAATGAGAAGCTCGCTCGAGTGTCGAGTAGTCCTGTTCTGAAAGCACTTGGTGGATCTCAAACAGAATTGGCGAATTCTCAAGAGGAATCAACAATCTCAGAGCAAACCCCAAATGGGGAAAATGGGGTGAATGCGAATTCAAGGAAAAGAAAAGCTTCTTCCAAGGGAAAAACCAGAGAAACTTCAACTTCAACCAATCCTACTCCCAAGGCTAATGAAACCAATGAAGATTCAAATGCAAAGCGCAGCAAGCCAAACGAAGGTGAAGGACATGATAATGGACCTGTGAAGGTGGAGGAAGATTCAAAAGGAGGTACTAGCAATGGAGGAGATGAGAAGCAACAGACCAAGAGTAACTCATCAAAACCTCCTGAACCTCCAAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCCACTGACAGCCACAGTCTTGCAGAAAGAGTCCGAAGAGAAAAAATCAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTACCTGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTTGATGAAATTATAAACTATGTGCAGTCATTGCAGCGTCAAGTTGAGTTTTTATCTATGAAACTGGCCTCTGTGGACAGCAGGCTGGACTTCAACATTGACAATCTAATCTCAAAAGATATGTTTCAGTCAAATAACTCTTTGGCACACTCAATATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCAGCAGCACGCTCAGCAAAACCCAGGAATCCACAATAACATTCTTAATGGTGTTGTGTCCCACAGCACAGTAGACCCATTAGAAACTGCTTCTCTGTGCCAAAACATGGGCATGCAATTGCCTCCACTTAATGGCTTTAATGAAGGTGGTTCTCAGTTTCCAGTAGCATTCTGTGAGGATGACCTTCACACCATTGTTCAGATGGGATTCGGCCAAACTGGACATGGAAAATCACCCAGTCATTCCCAGAACTTCAACGGTTCAAATCAAGTTACCCATCTGAAAGTTGAACCCTAA 1629 0.4444 MENEFFLNAASFHFEPPPPSSMPTWQSLSSAMDVQASVLNCSSEQPRDCFYNNTKWDKSTDHHGLQFDSALSSIVSSPVASNSNVMPSNENFTIRELIGKLGNIGASPYINGGNSTDTSCYSTPLSSPPKMNMMNQLLKENLPSLGKSMVLNSNVAEFSSDPGFAERAAKFSCFGSRSFNGRTCQLGRNNGQLSVRSTPSMENEKLARVSSSPVLKALGGSQTELANSQEESTISEQTPNGENGVNANSRKRKASSKGKTRETSTSTNPTPKANETNEDSNAKRSKPNEGEGHDNGPVKVEEDSKGGTSNGGDEKQQTKSNSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVDSRLDFNIDNLISKDMFQSNNSLAHSIFPLDSSAQAFYGQQHAQQNPGIHNNILNGVVSHSTVDPLETASLCQNMGMQLPPLNGFNEGGSQFPVAFCEDDLHTIVQMGFGQTGHGKSPSHSQNFNGSNQVTHLKVEP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0555 542 MobiDBLite consensus disorder prediction 184 332 - -
Prci12g0555 542 MobiDBLite consensus disorder prediction 516 542 - -
Prci12g0555 542 CDD bHLH_AtBPE_like 331 416 - -
Prci12g0555 542 FunFam Basic helix-loop-helix transcription factor 338 410 - -
Prci12g0555 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 409 IPR036638 GO:0046983
Prci12g0555 542 Gene3D - 338 412 IPR036638 GO:0046983
Prci12g0555 542 MobiDBLite consensus disorder prediction 310 325 - -
Prci12g0555 542 MobiDBLite consensus disorder prediction 184 207 - -
Prci12g0555 542 MobiDBLite consensus disorder prediction 260 276 - -
Prci12g0555 542 SMART finulus 347 397 IPR011598 GO:0046983
Prci12g0555 542 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 229 449 IPR024097 GO:0006355
Prci12g0555 542 MobiDBLite consensus disorder prediction 277 309 - -
Prci12g0555 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 391 IPR011598 GO:0046983
Prci12g0555 542 Coils Coil 388 408 - -
Prci12g0555 542 Pfam Helix-loop-helix DNA-binding domain 345 392 IPR011598 GO:0046983
Prci12g0555 542 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0555 Prci-Chr12 4838755 4841978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0555 1 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 47.628 8.93e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g0555 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0555 - - gmx:100812081 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1931 13 34291050 34294407 Prci12g0555 12 4838755 4841978 CCT