Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0553 ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAACCAGCAAACACTAAGCTGTCAAGCAACAAGACAGTCAGGAGAGTTCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCTTTGCGATTAGATACTGGAAATTATTCATGGGGTAGTGAAGCCGTGACCCGCAAGACACGTATACTAGATGTGGTTTATAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACCCTTGTGAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCATTATGGTGTTGATATTGGCAGGAAGAAGAAAACAGCTGCCAAGAAGGATTCTGCAGAGGAGGGTGAAGCTGCTGCTGTTGAAGAGACAAAGAAAAGTAATCATGTGCTTAGAAAACTAGAGAAGCGCCAGAAAGATCGAAAGCTTGATCCCCACATTGAAGAGCAATTTGGTGGCGGCCGATTGTTGGCTTGCATTTCTTCTCGTCCTGGTCAATGTGGCCGAGCTGATGGTTACATCTTGGAAGGCAAGGAGTTGGAGTTTTACACGAAGAAAATCCAGAGGAAGAAGGGAAAGGGTGCTGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTGGGTCGTCAACCAGCAAATACTAAGCTTTCAAGCAACAAGACAGTCAGGAGAGTTCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCTTTGCGATTAGATACCGGAAATTATTCCTGGGGTAGTGAAGCCGTGACCCGCAAGACACGTATACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGAGAACTCAAACCCTTGTGAAGAGTGCTATCATTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCATTATGGTGTTGATATTGGCAGGAAGAAGAAAACAGCTGCCAAGAAGGATTCTGCAGAGGAGGGTGAAGCTGCTGCCGTTGAAGAGACAAAGAAAAGTAATCACGTGCTTAGAAAACTAGAGAAGCGCCAGAAAGATCGAAAGCTTGATCCCCACATTGAAGAGCAATTTGGTGGCGGCCGATTGTTGGCTTGCATTTCTTCTCGTCCTGGTCAATGTGGCCGAGCTGATGGTTACATCTTGGAAGGCAAGGAGTTGGAGTTTTACATGAAGAAAATCCAGAGAAAGAAGGGAAAGGGTGCTGGTGCTGCTTGA 1311 0.4683 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGEAAAVEETKKSNHVLRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYTKKIQRKKGKGAGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGEAAAVEETKKSNHVLRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0553 436 ProSitePatterns Ribosomal protein S8e signature. 227 246 IPR018283 GO:0003735|GO:0005840|GO:0006412
Prci12g0553 436 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Prci12g0553 436 MobiDBLite consensus disorder prediction 1 42 - -
Prci12g0553 436 FunFam 40S ribosomal protein S8 32 161 - -
Prci12g0553 436 Gene3D Ribosomal protein S8e, subdomain 324 392 IPR042563 -
Prci12g0553 436 MobiDBLite consensus disorder prediction 11 26 - -
Prci12g0553 436 FunFam 40S ribosomal protein S8 109 176 - -
Prci12g0553 436 Gene3D - 243 429 - -
Prci12g0553 436 FunFam 40S ribosomal protein S8 378 431 - -
Prci12g0553 436 FunFam 40S ribosomal protein S8 325 392 - -
Prci12g0553 436 CDD Ribosomal_S8e_like 5 197 - -
Prci12g0553 436 FunFam 40S ribosomal protein S8 248 377 - -
Prci12g0553 436 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Prci12g0553 436 NCBIfam ribosomal protein eS8 218 415 IPR001047 GO:0003735|GO:0005840|GO:0006412
Prci12g0553 436 Gene3D - 32 161 - -
Prci12g0553 436 Gene3D - 162 215 - -
Prci12g0553 436 Pfam Ribosomal protein S8e 221 413 IPR022309 -
Prci12g0553 436 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Prci12g0553 436 CDD Ribosomal_S8e_like 221 413 - -
Prci12g0553 436 MobiDBLite consensus disorder prediction 215 236 - -
Prci12g0553 436 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0553 Prci-Chr12 4804801 4812199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0553 218 436 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.018 1.20e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0553 K02995 - pcin:129288318 835.484