Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0549 ATGGAAAGATATAAAATTTTGAGAGATCTCGGAGATGGTTCTTGCGGTCATGTATATAAGGCTCGTGATTTGAGGACACACGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTCTATTTCTGGGAAGAATTTACAAATTTGCGAGAAGTCAAGGCCCTTCAAAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTATCAGGGAAAATAACGAACTGTTTTTCATATTCGAATACATGGATTATAATCTTTATCAATTAATAAAAGACAGACAAAAGCCCTTTCCAGAGGAAGAGATACGTTCCTTTATGAAGCAAGTGCTGCGAGGTCTTAGTCACATGCACAAGAAAGGATTCTTTCACCGGGACTTGAAACCGGAGAATTTGCTGGTGACAAATGATGTTCTTAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCTTATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTACAGTCTCCATGTTATACTCCTGCTGTTGACATGTGGGCAGCTGGCGCTATATTAGCTGAGCTTTTCACGTTGAACCCCATATTCCCGGGTGAAAGTGAAATAGATCAACTATTCAAGATTTATTGTGTTCTTGGTACACCGGATTTGACTTCTTTCCCTGTGGGAGCAAACAACTTGAGGCTATTAGACGTTGTTGGTCATGAAGTGGTTCCACCTTCGAAGCTTTCTGATATAATTCCTAATGCTAGCTCAGAAGCTGTAGACTTGATCACGCAACTATTATCATGGGACCCATCAAGAAGGCCAGATGCAGATCATGCACTGCAACATCCTTTTTTCCATGTGAGTACATGGGTTCCGTGTCCAATTCACGATCCACTTGAACTGAAGCTGAGTAGCAAGAGGGCAAAACCAAATCTTGAGCTTAAGTTGCAGGATTTTGGCCCTGACCCCGATGACTGTTTTCTTGGCTTAACTTTAGCTGTAAAGCCCAGCATTTCAAACTTGGATGTGACCCGCAATGTATCGCAAGGCATGGGAGAGAATGTGCTGTTCTGTTCCGAGTTCAGTAATCATTCAGACCAATCAGTTTTTTGGACATTTTTGTCTCCGGATCAAAATGGAGTCCACTCCTCGGCAGAGACTTCGTTGTCATTGTCATTTGGTTCAATTCAGCACCAACCAATTGGAGTTCCGCAGTCAACAGGATTCTCCTTCCAGCCTTTGCAGCCTAACATTTTAACTCCACCATTTTTGGCTGTGTCTTCTCCTTTCCACAGTGGGCACTGCCTTTAG 1308 0.419 MERYKILRDLGDGSCGHVYKARDLRTHEIVAVKKLKRKFYFWEEFTNLREVKALQKMNHPNIIKLKEVIRENNELFFIFEYMDYNLYQLIKDRQKPFPEEEIRSFMKQVLRGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSPCYTPAVDMWAAGAILAELFTLNPIFPGESEIDQLFKIYCVLGTPDLTSFPVGANNLRLLDVVGHEVVPPSKLSDIIPNASSEAVDLITQLLSWDPSRRPDADHALQHPFFHVSTWVPCPIHDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSISNLDVTRNVSQGMGENVLFCSEFSNHSDQSVFWTFLSPDQNGVHSSAETSLSLSFGSIQHQPIGVPQSTGFSFQPLQPNILTPPFLAVSSPFHSGHCL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0549 435 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0549 435 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0549 435 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Prci12g0549 435 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Prci12g0549 435 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 291 - -
Prci12g0549 435 CDD STKc_MAK_like 4 284 - -
Prci12g0549 435 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0549 435 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Prci12g0549 435 Gene3D Transferase(Phosphotransferase) domain 1 83 289 - -
Prci12g0549 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 310 - -
Prci12g0549 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0549 Prci-Chr12 4760437 4771076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0549 1 310 Core Cell Cycle Gene Families AT1G66750 39.252 5.27e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Prci12g0549 Pkinase 3.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0549 K08829 K08830 gmx:100792842 771.926