Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0502 ATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAGTAATGGGATTTCCAAAGGCAAAGGCAACGCGAGGCCTCCATTATTCTGGCAATACTAATGTAGAGGACGCTATAAATTGGATAATTGATCATGAAAATGATCCTGATATTGATGAGATTCCGTTGGTAGATATAGATATTGAGATCGGTTCTTCTCAATCATTCCCTATTACAGAAGAAGTGAAAATCAAAGCACAGAAGTTAAGGGAACAATTGCACAAGAGGAAGGATGAAGAAGAAAGGAAATTGGAGATACAAAGGGAAAAGGAGAGAATCCAAGCTGGTAAGAAACTCAATGAGATGAAGCGAATTGCCGAAGAAAATGAAAGGCAACGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAGGTCATGCAGAAACTTGAACAGGATAAGATAAACAGAAGATCTAAACCTGGGTTGCCCCTAGAAGGCCATGCGACCAGGAAATCTTTATCTTTAACAATACAGAAAGAAACGAATCCGAAGCCTGTTTACACCGTTACAAAAGTTGACCTGTTGAGAGAATGTTTGAGGTCCCTCAAGCGTAACCACCAGGATGAGCATGCAAGAGTCAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAAGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTGAACGGAGGTGTGGATTTTCTTGAACTCTGTGGGTTTGAGAAAATGGATGACTTTTTGTATCTCCCTGAGGAAAAAGTAGATATAACACTGCTAAATTCAGCTGGATTAGTATTAAAGTCTGCCATTACAAATCCCTTCTTCGGACTTTTTAGCACTCGGACATTGTTATAA 933 0.3987 MAVPKVDKKMLEELEVMGFPKAKATRGLHYSGNTNVEDAINWIIDHENDPDIDEIPLVDIDIEIGSSQSFPITEEVKIKAQKLREQLHKRKDEEERKLEIQREKERIQAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRAREKVMQKLEQDKINRRSKPGLPLEGHATRKSLSLTIQKETNPKPVYTVTKVDLLRECLRSLKRNHQDEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQDRVGSLNGGVDFLELCGFEKMDDFLYLPEEKVDITLLNSAGLVLKSAITNPFFGLFSTRTLL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0502 310 Gene3D - 198 293 - -
Prci12g0502 310 SMART PGNneu 216 277 - -
Prci12g0502 310 Coils Coil 73 110 - -
Prci12g0502 310 Gene3D - 7 53 - -
Prci12g0502 310 Pfam UBA/TS-N domain 7 43 IPR015940 -
Prci12g0502 310 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Prci12g0502 310 Pfam PUB domain 213 281 IPR018997 -
Prci12g0502 310 SUPERFAMILY PUG domain-like 187 300 IPR036339 -
Prci12g0502 310 CDD UBA_PUB_plant 6 53 - -
Prci12g0502 310 Coils Coil 120 156 - -
Prci12g0502 310 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Prci12g0502 310 PANTHER F13M7.16 PROTEIN 1 303 - -
Prci12g0502 310 SMART uba_6 7 45 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0502 Prci-Chr12 4380090 4385748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0502 1 304 C2H2 Transcription Factor Family AT1G04850 56.958 1.24e-98 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0502 - K24348 gmx:100781260 443.351