Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0501 ATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAGTAATGGGATTTCCAAAGGCAAAGGCAACGCGAGGCCTCCATTATTCTGGCAATACTAATGTAGAGGACGCTATAAATTGGATAATTGATCATGAAAATGATCCTGATATTGATGAGATTCCGTTGGTAGATATAGATATTGAGATCGGTTCTTCTCAATCATTCCCTATTACAGAAGAAGTGAAAATCAAAGCACAGAAGTTAAGGGAACAATTGCACAAGAGGAAGGATGAAGAAGAAAGGAAATTGGAGATACAAAGGGAAAAGGAGAGAATCCAAGCTGGTAAGAAACTCAATGAGATGAAGCGAATTGCCGAAGAAAATGAAAGGCAACGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAGGTCATGCAGAAACTTGAACAGGATAAGATAAACAGAAGATCTAAACCTGGGTTGCCCCTAGAAGGCCATGCGACCAGGAAATCTTTATCTTTAACAATACAGAAAGAAACGAAACTGCAGAATCCGAAGCCTGTTTACACCGTTACAAAAGTTGACCTGTTGAGAGAATGTTTGAGGTCCCTCAAGCGTAACCACCAGGATGAGCATGCAAGAGTCAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAAGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGATAGAGTTGGGAGTTTGAACGGAGGTGTGGATTTTCTTGAACTCTGTGGGTTTGAGAAAATGGATGACTTTTTGTATCTCCCTGAGGAAAAAGTAGATATAACACTGCTAAATTCAGCTGGATTAGTATTAAAGTCTGCCATTACAAATCCCTTCTTCGGACTTTTTAGCACTCGGACATTGTTATAA 942 0.3992 MAVPKVDKKMLEELEVMGFPKAKATRGLHYSGNTNVEDAINWIIDHENDPDIDEIPLVDIDIEIGSSQSFPITEEVKIKAQKLREQLHKRKDEEERKLEIQREKERIQAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRAREKVMQKLEQDKINRRSKPGLPLEGHATRKSLSLTIQKETKLQNPKPVYTVTKVDLLRECLRSLKRNHQDEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQDRVGSLNGGVDFLELCGFEKMDDFLYLPEEKVDITLLNSAGLVLKSAITNPFFGLFSTRTLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0501 313 Coils Coil 73 110 - -
Prci12g0501 313 PANTHER F13M7.16 PROTEIN 1 306 - -
Prci12g0501 313 Gene3D - 7 53 - -
Prci12g0501 313 Pfam PUB domain 216 284 IPR018997 -
Prci12g0501 313 SUPERFAMILY PUG domain-like 190 303 IPR036339 -
Prci12g0501 313 Gene3D - 200 296 - -
Prci12g0501 313 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Prci12g0501 313 CDD UBA_PUB_plant 6 53 - -
Prci12g0501 313 Pfam UBA/TS-N domain 7 43 IPR015940 -
Prci12g0501 313 Coils Coil 120 156 - -
Prci12g0501 313 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Prci12g0501 313 SMART PGNneu 219 280 - -
Prci12g0501 313 SMART uba_6 7 45 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0501 Prci-Chr12 4380088 4385748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0501 1 307 C2H2 Transcription Factor Family AT1G04850 56.731 4.00e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0501 - - gmx:100781260 439.884