Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0500 ATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGAAGTAATGGGATTTCCAAAGGCAAAGGCAACGCGAGGCCTCCATTATTCTGGCAATACTAATGTAGAGGACGCTATAAATTGGATAATTGATCATGAAAATGATCCTGATATTGATGAGATTCCGTTGGTAGATATAGATATTGAGATCGGTTCTTCTCAATCATTCCCTATTACAGAAGAAGTGAAAATCAAAGCACAGAAGTTAAGGGAACAATTGCACAAGAGGAAGGATGAAGAAGAAAGGAAATTGGAGATACAAAGGGAAAAGGAGAGAATCCAAGCTGGTAAGAAACTCAATGAGATGAAGCGAATTGCCGAAGAAAATGAAAGGCAACGACATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAGGTCATGCAGAAACTTGAACAGGATAAGATAAACAGAAGATCTAAACCTGGGTTGCCCCTAGAAGGCCATGCGACCAGGAAATCTTTATCTTTAACAATACAGAAAGAAACGAAACTGCAGAATCCGAAGCCTGTTTACACCGTTACAAAAGTTGACCTGTTGAGAGAATGTTTGAGGTCCCTCAAGCGTAACCACCAGGATGAGCATGCAAGAGTCAGAAGGGCCTTTGAAACACTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAAGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGAGTTGGGAGTTTGAACGGAGGTGTGGATTTTCTTGA 789 0.4056 MAVPKVDKKMLEELEVMGFPKAKATRGLHYSGNTNVEDAINWIIDHENDPDIDEIPLVDIDIEIGSSQSFPITEEVKIKAQKLREQLHKRKDEEERKLEIQREKERIQAGKKLNEMKRIAEENERQRHIALRKAEKEEEKRAREKVMQKLEQDKINRRSKPGLPLEGHATRKSLSLTIQKETKLQNPKPVYTVTKVDLLRECLRSLKRNHQDEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQSWEFERRCGFS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0500 262 Pfam PUB domain 216 252 IPR018997 -
Prci12g0500 262 Coils Coil 73 110 - -
Prci12g0500 262 Gene3D - 194 253 - -
Prci12g0500 262 Gene3D - 7 53 - -
Prci12g0500 262 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Prci12g0500 262 PANTHER F13M7.16 PROTEIN 1 252 - -
Prci12g0500 262 SUPERFAMILY PUG domain-like 190 252 IPR036339 -
Prci12g0500 262 CDD UBA_PUB_plant 6 53 - -
Prci12g0500 262 Coils Coil 120 156 - -
Prci12g0500 262 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Prci12g0500 262 SMART uba_6 7 45 IPR015940 -
Prci12g0500 262 Pfam UBA/TS-N domain 7 43 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0500 Prci-Chr12 4380087 4385519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0500 1 261 C2H2 Transcription Factor Family AT1G04850 54.815 1.32e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0500 - - vum:124828089 352.443