Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0483 ATGCCATTAGCGGATAGCCAACGAGACTCGCTAGCCGGATTAACCCTCGACGACGTGTTAGCCAACCGAGCCGCCGCGTCGAGCCATCAGCTCACAATCACAAACCGTCGAACCCTCCTTGACATCATCCGTGAAGACGAGTCCGCCAATAGGGATCGCAAGTCTTGGAAAGCCTTTAAAGACAAGCTTCGGCTGAAACGCGCCGGATCTGCTTGGACTTCCTCCGTCCTTATCCCTGCCTCAGATATCCCTTTCCCTATCCGGAATAACAGAAACTTCCCCCCACAGCTTCCCCGTCGCAGCTCCGTCCGAGTCCTCACATTCTCCCCCCTGGACGTCACCGCTCACTGCATGGCTGATCCCACCGAAGAAGCCATCAAGAGTTCCCATCTCGCTCCCGCAATCACGCGCCAGAGATCCACGCGCCAGGTCGGGGATGCCGTTTTCGTCGACGATAAACTCAAGCCTCAGATTTCCCGCCCGAACTCCGCACGCCTGGCGGCGGCAGTGCGGGCGGATTCCATCCGGCGAAAGCGCGTGGTGACATTTCGAGACAACATTGAAAGCGATGACGACGAGGACGAGGACGGCCACATGCGCCAGCCGAGGGAGGAGAGACAGATGTCTGCTAGGGAAGCTGTGGCTGCACAGGAGGCGGCGGAGGCGGCAGCGATGGCGGAGGAGGAGGAAGATGATGAAGACGAAGAGGAAGAATCGTTCGGGGCTGGGGGACGCGGGGTGACAATGTCGCTGATGGACCTGTTGGAGGAGACGGATAGGCAAATGGGACTCGAAGGATCGACGTACAGAATGGAAAACGATGACGACGAGGATTTTGATGAGGATGATGAAGACGACGAAGGAGGTGAGGAGCACGATTGCTGCGTGTGCATGGTGAAGCATAGAGGTGCGGCTTTTGTGCCGTGTGGGCACTCGTTTTGCAGGATGTGTTCCAGGGAGCTCACTGTGAGCAAGGGAAATTGCCCCCTCTGCAACAATTTCATCTTGGAGATTCTTGAGGTTTTCTGA 1029 0.5714 MPLADSQRDSLAGLTLDDVLANRAAASSHQLTITNRRTLLDIIREDESANRDRKSWKAFKDKLRLKRAGSAWTSSVLIPASDIPFPIRNNRNFPPQLPRRSSVRVLTFSPLDVTAHCMADPTEEAIKSSHLAPAITRQRSTRQVGDAVFVDDKLKPQISRPNSARLAAAVRADSIRRKRVVTFRDNIESDDDEDEDGHMRQPREERQMSAREAVAAQEAAEAAAMAEEEEDDEDEEEESFGAGGRGVTMSLMDLLEETDRQMGLEGSTYRMENDDDEDFDEDDEDDEGGEEHDCCVCMVKHRGAAFVPCGHSFCRMCSRELTVSKGNCPLCNNFILEILEVF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0483 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 342 IPR013083 -
Prci12g0483 342 SUPERFAMILY RING/U-box 293 338 - -
Prci12g0483 342 PANTHER OS01G0917900 PROTEIN 7 342 - -
Prci12g0483 342 MobiDBLite consensus disorder prediction 196 211 - -
Prci12g0483 342 MobiDBLite consensus disorder prediction 271 287 - -
Prci12g0483 342 MobiDBLite consensus disorder prediction 264 287 - -
Prci12g0483 342 MobiDBLite consensus disorder prediction 223 239 - -
Prci12g0483 342 MobiDBLite consensus disorder prediction 186 247 - -
Prci12g0483 342 ProSiteProfiles Zinc finger RING-type profile. 294 332 IPR001841 -
Prci12g0483 342 Coils Coil 216 239 - -
Prci12g0483 342 SMART ring_2 294 331 IPR001841 -
Prci12g0483 342 Pfam Zinc finger, C3HC4 type (RING finger) 291 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0483 Prci-Chr12 4319997 4322075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0483 1 342 C3H Transcription Factor Family AT3G07120 41.026 1.09e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0483 - - pcin:129287682 587.03