Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0480 ATGAAACGTCCGGTCGATGACATCGTCGTGCCCTTGGCTTCTTCCTCCACCGTTGCTGCGCCTTCGAAGCCGGTGTTCTTAACAAAAGCTCAACGCGAACAATTGGCCCTTCAACGACGCCAAGAAGAAATCACAGAACAAAGACGCCGTCAGGAACAGCTGCTTTCTCGGAACCGCCCATCCGACCCGAACCCCGAGTCTAAACCCTCCGATTCCGACCGACGCGACCGCGACCGAGAACGCGATCGTGACCGCGATCGTGACCGGGATAGAGAGCGGGAGCGCGACCGTGAGCGCGAGCGAGATAGGGCTCGCGATCGGGACCGTGAAACAGAACGTAGGAACCGCGAGAGGGAGCGTGAAGAGGAGGCTAAGACCCGCGAGCGTGCTCGGATGGAGAAATTGGCAGAGCGGGAGCGTGAGAAAGAGCTTGAAGCGATCAAGGAGCAGTATCTTGGATCAAAGAAGCCTAAGAAGCGGGTCATCAAACCCAGTGAGAAGTTTCGGTTTTCCTTCGACTGGGAGAACACGGAGGATACTTCTCGTGACATGAACACACTTTACCAGAACCCTCATGAAGCGCAGCTTCTCTTTGGTCGAGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAAAAGCTCGCTGCCAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGGGTGGAGGAGAAGCCCGAAGAGGCCGTTGCACAACGGCGAAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGTCATTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGCTGAGTCCTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTGCCATTCCTCTTGGCCTTCAGCAGCGTGATGTTATTGGCGTTGCCGAGACTGGTTCAGGGAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACTCGTGAACTTGCACAGCAGATTGAGGATGAGACGGTGAAGTTTGCTCAATATCTCGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGCGAAATTGTAATTGCGACTCCCGGTCGATTGATTGATTGCCTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTGGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTATAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCCAGGAAATATTTAAGGAATCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAGAAATTTTACAAACTGCAACGTTTACTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGACAGGGAAGGCTACCGTGTAACCACTTTGCATGGTGGCAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAAAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAATTATGACATGCCTGGAAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCAGGGAAGACTGGTGTGGCCACAACGTTCCTGACTCTTCAAGACAGTGATGTTTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTTCCTCCTGAATTGGCGAGACACGAGGCTTCAAAATTCAAGCCAGGAACTATTCCTGATAGACCACCTAGACGAAACGACACTGTATTTGCACACTGA 2154 0.4921 MKRPVDDIVVPLASSSTVAAPSKPVFLTKAQREQLALQRRQEEITEQRRRQEQLLSRNRPSDPNPESKPSDSDRRDRDRERDRDRDRDRDRERERDRERERDRARDRDRETERRNREREREEEAKTRERARMEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNTLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0480 717 FunFam probable ATP-dependent RNA helicase DDX23 258 527 - -
Prci12g0480 717 Pfam DEAD/DEAH box helicase 322 512 IPR011545 GO:0003676|GO:0005524
Prci12g0480 717 Pfam Helicase conserved C-terminal domain 549 655 IPR001650 -
Prci12g0480 717 FunFam probable ATP-dependent RNA helicase DDX23 528 716 - -
Prci12g0480 717 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 297 325 IPR014014 GO:0003724
Prci12g0480 717 MobiDBLite consensus disorder prediction 692 717 - -
Prci12g0480 717 Coils Coil 209 235 - -
Prci12g0480 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 328 523 IPR014001 -
Prci12g0480 717 MobiDBLite consensus disorder prediction 38 56 - -
Prci12g0480 717 MobiDBLite consensus disorder prediction 38 140 - -
Prci12g0480 717 MobiDBLite consensus disorder prediction 685 717 - -
Prci12g0480 717 SMART helicmild6 574 655 IPR001650 -
Prci12g0480 717 Coils Coil 101 145 - -
Prci12g0480 717 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 452 460 IPR000629 -
Prci12g0480 717 MobiDBLite consensus disorder prediction 214 240 - -
Prci12g0480 717 CDD DEADc_DDX23 308 524 - -
Prci12g0480 717 Gene3D - 258 527 IPR027417 -
Prci12g0480 717 SMART ultradead3 316 538 IPR014001 -
Prci12g0480 717 CDD SF2_C_DEAD 535 664 - -
Prci12g0480 717 Coils Coil 27 57 - -
Prci12g0480 717 Gene3D - 528 715 IPR027417 -
Prci12g0480 717 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 229 694 - -
Prci12g0480 717 MobiDBLite consensus disorder prediction 64 140 - -
Prci12g0480 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 676 IPR027417 -
Prci12g0480 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 550 694 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0480 Prci-Chr12 4256779 4259205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0480 298 691 Eukaryotic Initiation Factors Gene Family AT1G72730 32.911 1.01e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0480 K12858 - gmx:100799264 1121.3