Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci12g0480 | ATGAAACGTCCGGTCGATGACATCGTCGTGCCCTTGGCTTCTTCCTCCACCGTTGCTGCGCCTTCGAAGCCGGTGTTCTTAACAAAAGCTCAACGCGAACAATTGGCCCTTCAACGACGCCAAGAAGAAATCACAGAACAAAGACGCCGTCAGGAACAGCTGCTTTCTCGGAACCGCCCATCCGACCCGAACCCCGAGTCTAAACCCTCCGATTCCGACCGACGCGACCGCGACCGAGAACGCGATCGTGACCGCGATCGTGACCGGGATAGAGAGCGGGAGCGCGACCGTGAGCGCGAGCGAGATAGGGCTCGCGATCGGGACCGTGAAACAGAACGTAGGAACCGCGAGAGGGAGCGTGAAGAGGAGGCTAAGACCCGCGAGCGTGCTCGGATGGAGAAATTGGCAGAGCGGGAGCGTGAGAAAGAGCTTGAAGCGATCAAGGAGCAGTATCTTGGATCAAAGAAGCCTAAGAAGCGGGTCATCAAACCCAGTGAGAAGTTTCGGTTTTCCTTCGACTGGGAGAACACGGAGGATACTTCTCGTGACATGAACACACTTTACCAGAACCCTCATGAAGCGCAGCTTCTCTTTGGTCGAGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAAAAGCTCGCTGCCAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGGGTGGAGGAGAAGCCCGAAGAGGCCGTTGCACAACGGCGAAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGTCATTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGCTGAGTCCTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTGCCATTCCTCTTGGCCTTCAGCAGCGTGATGTTATTGGCGTTGCCGAGACTGGTTCAGGGAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACTCGTGAACTTGCACAGCAGATTGAGGATGAGACGGTGAAGTTTGCTCAATATCTCGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGCGAAATTGTAATTGCGACTCCCGGTCGATTGATTGATTGCCTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTGGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTATAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCCAGGAAATATTTAAGGAATCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAGAAATTTTACAAACTGCAACGTTTACTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGACAGGGAAGGCTACCGTGTAACCACTTTGCATGGTGGCAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAAAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAATTATGACATGCCTGGAAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCAGGGAAGACTGGTGTGGCCACAACGTTCCTGACTCTTCAAGACAGTGATGTTTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTTCCTCCTGAATTGGCGAGACACGAGGCTTCAAAATTCAAGCCAGGAACTATTCCTGATAGACCACCTAGACGAAACGACACTGTATTTGCACACTGA | 2154 | 0.4921 | MKRPVDDIVVPLASSSTVAAPSKPVFLTKAQREQLALQRRQEEITEQRRRQEQLLSRNRPSDPNPESKPSDSDRRDRDRERDRDRDRDRDRERERDRERERDRARDRDRETERRNREREREEEAKTRERARMEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNTLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH | 717 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci12g0480 | 717 | FunFam | probable ATP-dependent RNA helicase DDX23 | 258 | 527 | - | - | |
Prci12g0480 | 717 | Pfam | DEAD/DEAH box helicase | 322 | 512 | IPR011545 | GO:0003676|GO:0005524 | |
Prci12g0480 | 717 | Pfam | Helicase conserved C-terminal domain | 549 | 655 | IPR001650 | - | |
Prci12g0480 | 717 | FunFam | probable ATP-dependent RNA helicase DDX23 | 528 | 716 | - | - | |
Prci12g0480 | 717 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 297 | 325 | IPR014014 | GO:0003724 | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 692 | 717 | - | - | |
Prci12g0480 | 717 | Coils | Coil | 209 | 235 | - | - | |
Prci12g0480 | 717 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 328 | 523 | IPR014001 | - | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 38 | 140 | - | - | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 685 | 717 | - | - | |
Prci12g0480 | 717 | SMART | helicmild6 | 574 | 655 | IPR001650 | - | |
Prci12g0480 | 717 | Coils | Coil | 101 | 145 | - | - | |
Prci12g0480 | 717 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 452 | 460 | IPR000629 | - | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 214 | 240 | - | - | |
Prci12g0480 | 717 | CDD | DEADc_DDX23 | 308 | 524 | - | - | |
Prci12g0480 | 717 | Gene3D | - | 258 | 527 | IPR027417 | - | |
Prci12g0480 | 717 | SMART | ultradead3 | 316 | 538 | IPR014001 | - | |
Prci12g0480 | 717 | CDD | SF2_C_DEAD | 535 | 664 | - | - | |
Prci12g0480 | 717 | Coils | Coil | 27 | 57 | - | - | |
Prci12g0480 | 717 | Gene3D | - | 528 | 715 | IPR027417 | - | |
Prci12g0480 | 717 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 229 | 694 | - | - | |
Prci12g0480 | 717 | MobiDBLite | consensus disorder prediction | 64 | 140 | - | - | |
Prci12g0480 | 717 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 373 | 676 | IPR027417 | - | |
Prci12g0480 | 717 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 550 | 694 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci12g0480 | Prci-Chr12 | 4256779 | 4259205 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci12g0480 | 298 | 691 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 32.911 | 1.01e-61 | 211 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci12g0480 | K12858 | - | gmx:100799264 | 1121.3 |