Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0461 ATGGCCCTGCAGGGAACGGAGAACGCATGCGAAGATACAAATCTTACCGACAATGAACAAGAAGAATTCTCTGAATCTTTTGTTTGCTGCGTTTGTCTGGATCTGTTATACAAGCCTATTGTACTGTCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATCGGTCGATGAACCCTCTGCGCGAGTCCCATTGTCCAATTTGTAGGCATCCATATTATCACTTTCCAACAATCTGTCAGATGCTTCACTTTCTGCTTCTGAAGATGTATCCTGCTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAAGAAACGGGGCTGCTACTCTCCTCAATTTGATGATGATAATCTTGTATCAGAAGTTAAGTTTGACCATCCAGGTACTTCATCTTCCTGCTATGCTGGAAATCTGGGTTCCAACCCACAGAATGCAGGACTTTCTGCAAGGATGGAGCAATCAGGGTCTGAAACTCAAGAGCAACATAAGGGCACCATCTCTAAAGATATTTTTGGTGGAACACCTGAAGCTTTTGGGACTCCTGCTCAAGTAAAACTTCTGCCTCGGAATGATAGGCAGCAGAAGATATTGGTTGAAGATGTCATGTGTTCAGCATGCAAGCAACTGCTTTTTTGTCCAGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGTATCGAGAACTCAGCTGATGAGATGCTTAGATGCCAAATTTGTCAACTTTCACATCCAAGGGGATTTCCAAACGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTTCCGGAGGAATATGCAAAGCAAAGAGATGCTGTTCAACTTAGGCATATCTATGGCAAACCTGAGATCCCTTCTTGTTCATTGAATAAGGGAAAAGGAGGAAAAGCGGCATGGTGGTCTGATCCTCAACCAAAAGTACATGTTGCAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAAGGTTGGTTTTGATCTTTGTGGTGATTGTTACAAAATTCGCAGCAAGATTCCTGGTCGGTTCAATCAGCAGCACACTCCGGACCATGAGTTTGAGCTGAAACAAAGTAATCTTATCCGTAACATAGTGACGCTGGTTGCTGGTCAGTCAGGAGATGGCTCTATTGACTATTTGCCTCTGGAAAGCATAGAGTTTAGACCTGAAGATCCCAATTTGGATGTTGATAGTGATGGAGAACATACCCAGAATGACTCTGAAGGCACCAATTGA 1278 0.4272 MALQGTENACEDTNLTDNEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHRSMNPLRESHCPICRHPYYHFPTICQMLHFLLLKMYPAAYKRREIQTLEEEKKRGCYSPQFDDDNLVSEVKFDHPGTSSSCYAGNLGSNPQNAGLSARMEQSGSETQEQHKGTISKDIFGGTPEAFGTPAQVKLLPRNDRQQKILVEDVMCSACKQLLFCPVVLNCGHVYCESCIENSADEMLRCQICQLSHPRGFPNVCLELDHFIKEQFPEEYAKQRDAVQLRHIYGKPEIPSCSLNKGKGGKAAWWSDPQPKVHVAVGCDFCGMFPIVGDRYRCKDCKEKVGFDLCGDCYKIRSKIPGRFNQQHTPDHEFELKQSNLIRNIVTLVAGQSGDGSIDYLPLESIEFRPEDPNLDVDSDGEHTQNDSEGTN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0461 425 SUPERFAMILY RING/U-box 198 264 - -
Prci12g0461 425 PANTHER UNCHARACTERIZED 19 373 - -
Prci12g0461 425 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Prci12g0461 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 284 IPR013083 -
Prci12g0461 425 Pfam Zinc finger, C3HC4 type (RING finger) 28 72 - -
Prci12g0461 425 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Prci12g0461 425 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
Prci12g0461 425 SUPERFAMILY RING/U-box 19 79 - -
Prci12g0461 425 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Prci12g0461 425 MobiDBLite consensus disorder prediction 403 418 - -
Prci12g0461 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 127 IPR013083 -
Prci12g0461 425 Pfam Zinc finger, ZZ type 311 349 IPR000433 GO:0008270
Prci12g0461 425 Pfam RING-type zinc-finger 205 234 IPR027370 -
Prci12g0461 425 Gene3D - 305 370 IPR043145 -
Prci12g0461 425 SMART ring_2 205 242 IPR001841 -
Prci12g0461 425 SMART ring_2 29 68 IPR001841 -
Prci12g0461 425 MobiDBLite consensus disorder prediction 403 425 - -
Prci12g0461 425 FunFam E3 ubiquitin-protein ligase PRT1 305 370 - -
Prci12g0461 425 SUPERFAMILY RING/U-box 303 368 - -
Prci12g0461 425 ProSiteProfiles Zinc finger ZZ-type profile. 311 375 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0461 Prci-Chr12 4113792 4120996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0461 14 69 C3H Transcription Factor Family AT1G74990 38.596 4.82e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0461 - - gmx:100787174 532.332