Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0402 ATGGTCTTGATCCAACAGGAAGAGGTTGGGACTGAAGAGAGAGTTGTGAATCTGTCTGAATCTGCGGAAACTGCAAAATCGTCAGCCTCCTCCAATGTCGATGACAGTAAAGAAGCTTCCGATGGCTTTGAAACCGCCAGCGACACTGAACTCGGCGGCGAGGTGGAGGAACGGGAACAACAACATCAACATCAGGAGCTGGGGATTCCTCCGGGAACTGATTCTTCCGAAGAGGCATCACACGATGAGGAATTGAAACAGAAAGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGAAATGAGCTATTCGGGGATGGTCAATTTGAGGAGGCACTATCAAAGTATGAATTTGCTTTACAAATGGCTCCAGATATGCCTTCATCTGTAGAAATTCGCTCAATATGCCATTCAAATCGTGCTGTATGCTTTATGAAATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCATATCTGAAAGCTCTGGTGAGAAGGGGGGAGGCGCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATTTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCTGAGATTGGAACCCCTGGCAGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATCGCTAAACTGAAAGATATGGGAAATTCTTTGCTGGGCCGCTTTGGGATGAGTGTTGACAACTTCAAAGCTGTTAAAGATCCGAACACTGGTTCCTACTCTATCTCATTCCAACGCTAA 798 0.4436 MVLIQQEEVGTEERVVNLSESAETAKSSASSNVDDSKEASDGFETASDTELGGEVEEREQQHQHQELGIPPGTDSSEEASHDEELKQKALAQANDAKLEGNELFGDGQFEEALSKYEFALQMAPDMPSSVEIRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTILRLEPLAAEKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVKDPNTGSYSISFQR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0402 265 Pfam Tetratricopeptide repeat 169 201 IPR013105 -
Prci12g0402 265 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Prci12g0402 265 SUPERFAMILY TPR-like 92 211 IPR011990 GO:0005515
Prci12g0402 265 MobiDBLite consensus disorder prediction 1 84 - -
Prci12g0402 265 MobiDBLite consensus disorder prediction 17 36 - -
Prci12g0402 265 Pfam Tetratricopeptide repeat 136 166 IPR001440 GO:0005515
Prci12g0402 265 Gene3D Tetratricopeptide repeat domain 54 231 IPR011990 GO:0005515
Prci12g0402 265 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 25 265 - -
Prci12g0402 265 SMART tpr_5 134 167 IPR019734 GO:0005515
Prci12g0402 265 SMART tpr_5 168 201 IPR019734 GO:0005515
Prci12g0402 265 SMART tpr_5 93 126 IPR019734 GO:0005515
Prci12g0402 265 ProSiteProfiles TPR repeat profile. 168 201 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0402 Prci-Chr12 3547751 3552262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0402 64 235 Calmodulin-binding Proteins AT3G25230 33.508 2.06e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0402 K24926 - qsa:O6P43_022248 365.155