Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0400 ATGATGGAGGCTTCTCTGAAATGGTCATTCATCGTTTTCGTTCTGACTATGGTGCTGCTTTTATCTAGCGCCAAGCCATTGAATGGGGATGAAAATGAGAAAGGCCGTCTTGTAATGTCAAGGAATGTAGAAACAGAGAAGTTGCAGAATTTGAAGAATTCATCAATGGCGGACAGGTTAAACGATGCTCCAAATGAACACGCAGTGGATAATCCAGAGGAGATAGCTTCCATGGTTGATATGAGCATACGCAATCATACTGAAAGAAGGAATCTGGGTTTCTTCTCATGTGTGACTGGAAATCCAATTGATGACTGCTGGCGCTGCGACAAACTTTGGCACAGACGGCGAAAGCGTTTGGCCAATTGTGGGATTGGGTTTGGACGTAATGCCATAGGTGGCCGTGACGGTAGGTTCTATATTGTGACTGATCCAAGTGATGACGATCCTGTCAACCCAAGACCAGGTACCCTGCGCCATGCGGTTATTCAAGATAGACCCTTATGGATTGTGTTCAAGAGGTCCATGGTTATCACTTTAAAGCAAGAGCTTATCATGAACAGCTTCAAGACCATAGATGGTCGTGGAGTGAATGTGCACATTGCCTATGGGGCTTGCATTACTATACAATTCATCACCAATGTCATCATCCATGGTTTACATATCCATGATTGCAAACGAACTGGTAATGCAATGGTTCGTAGCTCACCAACTCATTATGGTTGGAGAACTATGGCTGATGGAGATGGCATTTCCATTTTTGGTTCAAGCCACATTTGGATTGACCATAATTCAATGTCTAATTGCGCTGATGGCCTTGTTGATGCAATTATGGGGTCCACTGGTATTACCATTTCCAACAATTACTTCACCCACCACAACGAGGTTATGCTACTGGGCCACAGTGATACATATGTAAGAGATAAGCAAATGCAAGTAACCATTGCCTACAATCATTTTGGGGAGGGTCTTATCCAGAGAATGCCGAGGTGCAGGCATGGGTATTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGAAGTGCTAATCCCACAATTAACAGCCAAGGCAACCGATACCTTGCCCCTCGAAACCGTTTTGCTAAGGAGGTGACAAAGAGAGTGGGTACAGACACAAGGATATGGAAGCACTGGAACTGGAGGTCAATGGGAGACCTTATGTTGAATGGAGCCTACTTCACTTCATCAGGAGCTGGTGCTGCAGCAAGTTATGCCAGAGCCTCCAGTTTAGGGGCCAAGTCATCTTCCATGGTTGGTATCATTACTTCTGGAGCTGGTGTTCTTAACTGCCGCAGGGGCTTCACCTGTTAA 1350 0.4511 MMEASLKWSFIVFVLTMVLLLSSAKPLNGDENEKGRLVMSRNVETEKLQNLKNSSMADRLNDAPNEHAVDNPEEIASMVDMSIRNHTERRNLGFFSCVTGNPIDDCWRCDKLWHRRRKRLANCGIGFGRNAIGGRDGRFYIVTDPSDDDPVNPRPGTLRHAVIQDRPLWIVFKRSMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSMSNCADGLVDAIMGSTGITISNNYFTHHNEVMLLGHSDTYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPRNRFAKEVTKRVGTDTRIWKHWNWRSMGDLMLNGAYFTSSGAGAAASYARASSLGAKSSSMVGIITSGAGVLNCRRGFTC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0400 449 PANTHER PECTATE LYASE 18-RELATED 69 446 IPR045032 GO:0030570
Prci12g0400 449 SMART amb_all 175 372 IPR002022 -
Prci12g0400 449 Gene3D - 100 442 IPR012334 -
Prci12g0400 449 Pfam Pectate lyase 184 364 IPR002022 -
Prci12g0400 449 SUPERFAMILY Pectin lyase-like 78 444 IPR011050 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Prci12g0400 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Prci12g0400 449 FunFam Pectate lyase 100 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0400 Prci-Chr12 3528012 3534447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0400 36 449 Polysaccharide Lyase AT4G13710 77.014 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0400 K01728 - mnt:21398282 761.14