Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0398 ATGTATCGTCTAGGTCTTAGGGGTGGTTTTCGACAACTTCGTCACCTGCGAAACAATGTCTTGTTTCCATGTTCTTCCTTGTCCAATCATAATGACATGTCCTCCATGGCTGGCAAGGTGATCTCTTGCAAAGCTGCAGTGGCATGGGAAGCAGGGAAGCCATTGGAGATAGAGGAAGTGAAGGTTGATCCACCAAAGGAGAATGAAGTGAGGGTCAACATCAAGTATTCTTCACTCTGCCATACTGATCTCCATTTCTGGAAATCTAAGGGGACGTCACAGAGGTTCCCACGCATATATGGGCATGAAGCATCTGGGGTTGTAGAGAGTGTGGGAGAAGGAGTGAGAGACGTGAAAGCAGGGGATCATGTGCTGACAGTATTCAACGGAGAGTGTGGAGAATGCAGGCAATGCAAGTCATCAGAAGAGAGCAATATGTGTGAGCTTCTGAGAATAAATGCAGAGAGAGAGGTGATGATCAGCGATGGAAGGTCAAGGTTCTGCATTAATGGAACGCCTGTGAGCCACTTCTTAGGAACTTCCACTTTCAGTCAGTACTCTGTTCTTCACTCTGGCTGCCTCGTCAAGCTCCATCCCTCTGCTCCTCTCCACAAACTCTGTATTCTCAGTTGTGGCATCTCAACAGGATTAGGGGCAGCTCTCAACGTGGCCAAACCAAACAAGGGTGATTCTGTTGCAATCTTTGGTCTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGAATTGCTGGTGCATCCAGGATCATTGGGGTTGACTTAAATCCCGATAAATATGAGCAAGCCAAGAAATTTGGAATAACAGAGTTTGTGAATCCAAAGGACCATGATAAACCAATTCAGCAGGTCCTGATAGAGATGACAGACGGTGGAGTTGATAGGAGCATTGAGTGCTCTGGAAACATTGATTCCATGACCTCTGCTTTTGAAGCTGTTCAGGATGGATGGGGTGTTGCTGTGTTTGTGGGAGTACCAAAGAGTGATGCAGAGGTAAAGGTAAATCCATTTCTGTTTCTGAGTGAGAGGACCATCAAAGGCACTACCTTAGGCAACTACAAACCCAAGTCTCATCTTCCTTCTCTTATTGATGTGTGCCTCAATCATAAACTGGAGCTGGATAAATTTATAACGCACAGAGTTGGGCTTTCTGAAATAAACAAGGCATTTGATTACATGATTAAGGGCGATGGCTTGAGAACTATCATTCATATGGAAGACTGA 1242 0.4573 MYRLGLRGGFRQLRHLRNNVLFPCSSLSNHNDMSSMAGKVISCKAAVAWEAGKPLEIEEVKVDPPKENEVRVNIKYSSLCHTDLHFWKSKGTSQRFPRIYGHEASGVVESVGEGVRDVKAGDHVLTVFNGECGECRQCKSSEESNMCELLRINAEREVMISDGRSRFCINGTPVSHFLGTSTFSQYSVLHSGCLVKLHPSAPLHKLCILSCGISTGLGAALNVAKPNKGDSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPDKYEQAKKFGITEFVNPKDHDKPIQQVLIEMTDGGVDRSIECSGNIDSMTSAFEAVQDGWGVAVFVGVPKSDAEVKVNPFLFLSERTIKGTTLGNYKPKSHLPSLIDVCLNHKLELDKFITHRVGLSEINKAFDYMIKGDGLRTIIHMED 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0398 413 CDD alcohol_DH_plants 41 410 - -
Prci12g0398 413 FunFam Alcohol dehydrogenase 6 46 226 - -
Prci12g0398 413 Gene3D - 51 403 - -
Prci12g0398 413 Gene3D - 216 354 - -
Prci12g0398 413 FunFam Alcohol dehydrogenase class-P 216 354 - -
Prci12g0398 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 374 IPR036291 -
Prci12g0398 413 SUPERFAMILY GroES-like 37 219 IPR011032 -
Prci12g0398 413 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 101 115 IPR002328 GO:0008270|GO:0016491
Prci12g0398 413 PANTHER ALCOHOL DEHYDROGENASE 38 409 - -
Prci12g0398 413 Pfam Zinc-binding dehydrogenase 239 361 IPR013149 -
Prci12g0398 413 SUPERFAMILY GroES-like 362 410 IPR011032 -
Prci12g0398 413 Pfam Alcohol dehydrogenase GroES-like domain 68 173 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0398 Prci-Chr12 3497835 3502209 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0398 47 403 Monolignol Biosynthesis Gene Families AT1G72680 24.033 1.32e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0398 K18857 - egr:104426870 543.888