Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0389 ATGGTTTTCACTTCAATCCCTCCTTATCTTGATCCAGCCAACTGGCAGCAACAGCAGCCTCATCATCATCATCATCATACGGGCAATCTCGCCGGCGGTACGAGCTCTCAGCCGCAGCAGCAGCTTCTTTCGCCGCCACAGCCTCCGCCTTCGCTGCCTCCACCGCAGCCTCATGGAGCGGGAGGTACGGGTTCGATCAGGCCTGGTTCCATGGCTGATCGAGCCAGGATGGCGAACATACCCATGCCGGAGGCTGCTCTGAAATGTCCCAGATGTGAATCTACCAACACCAAGTTTTGCTACTTCAACAACTATAGCCTCTCTCAGCCTCGTCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGCGCTCTGAGGAATGTACCTGTCGGAGGGGGATGCCGGAGGAACAAGAGAAGCAAAGGAAGCAGCTCCAAGTCACCGGCGAGTTCAGATCGTCAAGCTGGGAGCACAAGTTCCACCAACTCCGTTTCTTCTAACAGTAATTCCGCCGGCGACATAATAGGCCTGGCCCCTCATGCGCCACAGCTCAGATTTATGTCTCCGTTACTCGCTGATTTCGCTGCTGCCGGTGACATGGGATTAAACTACGGCGTAAACTATAACGCAATTTCAGCTCCAATGGGTGGAGTAATCGGCGACTTAAACTTCCAAATAGGGAGTGCTTTAGGTGGAGGAGGAAGTGGCAGCACCGCTGCCGCCGGAGGAAGCAGCAGCGGGTCGATCTTGTTTGCTCCGGGTTTGGAGCAATGGCTGCCGCAAACACAGCAATTTCCCTTCTTGGCTGGACTGGAAGGTTCACCTGGATTGTACTCGTTTGAAGGTGGCACTGCCGGAGAGGGACTGGGATACGGCAGCATGAGTCTCCGGCCAAAGGCGTCACCAACAACATCCGGGGTGATAACTCAGCTGGCTTCGGTGAAAATGGAGGACAATAATAATCAGGAGATGAATTTGTCAAGGCAATTCCAACTGGGAAGTGAGCAGTATTGGGGTACTGGTGGTTCTACTTCTGCTTGGACTGATCTTTCTGGATTTAGCTCATCTTCAGCTACTAGCAATCCGCTATAG 1098 0.5364 MVFTSIPPYLDPANWQQQQPHHHHHHTGNLAGGTSSQPQQQLLSPPQPPPSLPPPQPHGAGGTGSIRPGSMADRARMANIPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPASSDRQAGSTSSTNSVSSNSNSAGDIIGLAPHAPQLRFMSPLLADFAAAGDMGLNYGVNYNAISAPMGGVIGDLNFQIGSALGGGGSGSTAAAGGSSSGSILFAPGLEQWRXPQTQQFPFLAGLEGSPGLYSFEGGTAGEGLGYGSMSLRPKASPTTSGVITQLASVKMEDNNNQEMNLSRQFQLGSEQYWGTGGSTSAWTDLSGFSSSSATSNPL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0389 366 MobiDBLite consensus disorder prediction 131 174 - -
Prci12g0389 366 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Prci12g0389 366 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Prci12g0389 366 MobiDBLite consensus disorder prediction 1 79 - -
Prci12g0389 366 MobiDBLite consensus disorder prediction 145 174 - -
Prci12g0389 366 MobiDBLite consensus disorder prediction 42 57 - -
Prci12g0389 366 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Prci12g0389 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 181 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0389 Prci-Chr12 3430844 3432581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0389 1 359 C2C2-Dof Transcription Factor Family AT2G37590 40.426 9.47e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci12g0389 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0389 - - cave:132161714 373.629