Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0319 ATGGAGTTTAGCCTTGAAAACAAGGACAAGTCTGAGAGAATAAGGTGGGGATATTCAGAGGAAGCAACACAAGTTAGATCCTATACGTGTGGATTCTGTCAGAAAGGATTTTCAAATGCACAAGCTCTTGGTGGTCACATGAACATTCATAGAAGAGACAGAGCGAGGCTGAGGCAACAATATTGTCAAGAGAATATTTGGCTGTCTCTTGACACTACGAACGGCGGTAATGATCTTTGTCACGATCAGCACCAGAACTCTGATTATAATATTCACAAAATGCCATCAATTTTCCCAGAGGCAAAGGTAAACATTGGTATTTCTTCAGAAATTTGTCAGCTTCCTATTTTTGTTCGGCTTTGA 363 0.4022 MEFSLENKDKSERIRWGYSEEATQVRSYTCGFCQKGFSNAQALGGHMNIHRRDRARLRQQYCQENIWLSLDTTNGGNDLCHDQHQNSDYNIHKMPSIFPEAKVNIGISSEICQLPIFVRL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0319 120 Gene3D Classic Zinc Finger 6 88 - -
Prci12g0319 120 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Prci12g0319 120 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Prci12g0319 120 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Prci12g0319 120 PANTHER OS07G0101800 PROTEIN 12 90 - -
Prci12g0319 120 FunFam Zinc finger protein-like 25 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0319 Prci-Chr12 2819446 2819808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0319 17 65 C2H2 Transcription Factor Family AT3G09290 65.306 4.18e-19 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci12g0319 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0319 - - pcin:129288282 256.529