Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0318 ATGGAGCAAGGTCAATTCTGGATGTGGACCAAGAGGAAGTACTCTGTGAGCTCTTCTAATCTCATCGTCACTTCTTCACCAACCACGAAACCCTCTTATTCTTCTTATGATGATTCTTCATGGGAAGAGCAAGCTTTCGCAGAAGATGCTTCTGGCCCTCTTGGTGGATGCATATGGCCACCCAGATCATACACTTGCAGCTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTAGGAGGCCACATGAATGTTCATAGAAGGGATAGAGCGAGACTCAAGCAACCTTCAAGCCCCCAAAACAGTGAACTTCAAATTCCAAATCCTTCTTCCTTTATGGGTTTCCTGTACCCGTGTCATAATAGTTCTGCTACTAACCCTAATTCTTATCAACCTAATTCTGTTCTTGTTGCTTCACCTTCTACTGATAAGGCTTTACCACCATCGTCAATCATTGAGGGAACCATGATGGTCCCGGCTTATAATTCTTCTTCTGTTATTCCCCAGCAAGCACATGAAGCTGCTGCTTCGAATTATTCTCCTCTCTATTCTTCTTCAAAATCGAACTGTTCAAACTTCGCTGAAGCTGAAGCTGAGAAGATCACAGAGGTATTGGATTGGAGGTGTGAGGATAATGGAAAGACTGATTTGGCTTTTAGTTTAAATTTGGTCGTGTGTAGAGGTATTGAGACAAAGGAAGAAGCTATTGGTTGCAAGAAGAGGAGAACTTCGGAATCTTCGTCGATTCTTCCTCTCTTCCCAAATTTAAATTCTTCAGTTGAATTTAGCCCTAGCTCCAAAGAAGAAGAGCTAGATCTGGAGCTAAGGCTGGGTCAAAGCAAGCACAAGGTTGTGATCATATCAATATTGCAGTTATATATAGACAAGCTTCTAAACTTCATAAATAGAGTGGCCCAATTAATGATCTCTCGGCTTGTTTCGACTAACAGATTATACTTGACATTGTACTTGATGGTTCCAATAATATCGATTCTTCCTAGAAATATCATGTAA 1014 0.4142 MEQGQFWMWTKRKYSVSSSNLIVTSSPTTKPSYSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNSELQIPNPSSFMGFLYPCHNSSATNPNSYQPNSVLVASPSTDKALPPSSIIEGTMMVPAYNSSSVIPQQAHEAAASNYSPLYSSSKSNCSNFAEAEAEKITEVLDWRCEDNGKTDLAFSLNLVVCRGIETKEEAIGCKKRRTSESSSILPLFPNLNSSVEFSPSSKEEELDLELRLGQSKHKVVIISILQLYIDKLLNFINRVAQLMISRLVSTNRLYLTLYLMVPIISILPRNIM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0318 337 Gene3D Classic Zinc Finger 61 110 - -
Prci12g0318 337 SMART c2h2final6 64 86 IPR013087 -
Prci12g0318 337 Pfam C2H2-type zinc finger 64 88 - -
Prci12g0318 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Prci12g0318 337 PANTHER OS07G0101800 PROTEIN 35 280 - -
Prci12g0318 337 MobiDBLite consensus disorder prediction 80 105 - -
Prci12g0318 337 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Prci12g0318 337 SUPERFAMILY beta-beta-alpha zinc fingers 61 90 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0318 Prci-Chr12 2806681 2808270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0318 38 123 C2H2 Transcription Factor Family AT2G37740 62.791 3.19e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci12g0318 zf-C2H2_6 6.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0318 - - pcin:129289629 630.943