Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0262 ATGGAAATTCAATTCCAACAGCCAAAGCAACAGCATCAGAAAGCAGGAATTCCAATCAGCAGAGGAGGGAAATTCAAAGGAAGGAACAGAAGCCGGAGCAACCCAAACAAGTTTGTAGGAGTGAGACAGAGGCCTTCAGGGCGATGGGTGGCTGAGATCAAAGACACGACACAGAAGATAAGAATGTGGCTTGGTACGTTCGAGACTGCAGAGGAGGCGGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGAACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTTGCTTCTCGGATTAGAAATCTACTCAACAACAATAAAACAGGGATTAAACAACAAAAACACCAACCAGAAGATCGTGTTGGGCCAGACTCTACCCCTAAAGCCAGAAGCACCAGTACTAGCACTACTAGCAGCAGCAGTTCTGGCAATAATCTTGACAACAATGAAGGTTCTCTTTCCAGTGGAACGATTCAAGATACCCATTTGCTTGATGATGGTTATAGACCAGATTTGAGCTACTGCAAGGAGGAATTTGCGTTGAGTTCAATGTCCCATCTTTCATGGGGCGGTTTTGGACCTGTTTTTGATCGGTTTCCTTTTGCTCAGGTTTCAGAGATGCCCAAGACTGAAGGGGTTGTGTCTAATACAGCTGACTTGGATCTTTTAGAATTTGAAAGGATGAAAGTTGAGAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGCAAACTGTTCAGGACTCCAATGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCGCTGCTCTGTTAA 834 0.4532 MEIQFQQPKQQHQKAGIPISRGGKFKGRNRSRSNPNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNNKTGIKQQKHQPEDRVGPDSTPKARSTSTSTTSSSSSGNNLDNNEGSLSSGTIQDTHLLDDGYRPDLSYCKEEFALSSMSHLSWGGFGPVFDRFPFAQVSEMPKTEGVVSNTADLDLLEFERMKVERQISASLYAINGVQEYMQTVQDSNEALWDLPPLCSLLC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0262 277 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Prci12g0262 277 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 MobiDBLite consensus disorder prediction 134 166 - -
Prci12g0262 277 MobiDBLite consensus disorder prediction 115 166 - -
Prci12g0262 277 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Prci12g0262 277 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Prci12g0262 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 242 - -
Prci12g0262 277 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Prci12g0262 277 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0262 Prci-Chr12 2136728 2137934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0262 24 277 AP2-EREBP Transcription Factor Family AT5G19790 41.154 3.47e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g0262 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0262 K09286 - gmx:100796898 355.525