Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0260 ATGCTTCAGATTCGGCTTAGTAAGGTTCCAGCCTCTGAAGGTTTAGCAGGGGTGAAGTCCTCACCTGTTGAGACTGTTACTGTTACATGTCCCGATCATCTAGTCCTTGCTGATCTTCCTGTGGCAAAGGGCATCGGTTCAGCAGCTGCTACTTCACTGGTGAAGACTCTTGGCCGTAGATCTCGTCGTCAATGTGGCGACTGTGTCCATTTCTGTGTTCGTTGTGATTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCAATGTGCTATCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTGGAAGGAATATTCATCTGTGCAGCTCCTCACTGTTTCAAGTCTTTCTTGAAGAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCACCCCAATGTAGATAAAGAAGATGGAAATGAGTCAGAGACTCATGGTGTTCGGCAACCTGCAATGTCAGAATCTTCTGCTCGAGCTCCCCAAAGGCCTGTTTTCTCTCCAGGTTCAAATTCCCAGCTAAATGATCGAGAAGACAAAGCTCGTCAACAACCACCAAGAGACCAACCACCTTCTAGGCCGACTTTGCAGCCAAAGCCACCCTCTTTTGGTCAAGTTCAAAGTCACTCCGCAGATCTCCAGTCTGGCTCTAATGGAGGTATTCCTCAGAGCTTCTATCAACAAAGTTCTGACATGCAGCGACCTCTACAAGAACCTTCCCAGTTTGCAGACCGGCACCGAGGTGTCACACCAGAGACACCACTTCCTGATTATCCATCCATGCATCCTTCCCAGCCACCCAATTTCGCTGTGCCAGTTAATGCTAACGCAATGTTGAATCCGCCTGTGCCATTTGGTTATCATCCCTTCCCACCACATGATGGAGCTCCGCCATTTTATGTAAACCCCTATGATATGCGTAGGCAGGACTCAGCTTCTGAAGTAGGTGGAGACCAGAGTTCCTTACTTGGTTTTCCACCGGGTTCTGCAACCGGCTCTAATTTTCCAGCAAATTATCCCCAGCCCTTGAGTGCAGGAACTGGTGGCCTACCTTTTGAACAAGGACATGGTGGCATGGCTATGGATCCAAGGGACGCTAAAGGTATATTGGCACCACAGTCCATGCCCCTCCCACCTCCACCTCCACTGCCGCCCATGTCCCATCTGAACCAGAAATATTATTCCGGTGAGTTTGGACACAATGGACATGGTTATGGTTGGCAGCATGATACTCGAGAAGCCTTTGGTGGTCAGGACTAG 1323 0.483 MLQIRLSKVPASEGLAGVKSSPVETVTVTCPDHLVLADLPVAKGIGSAAATSLVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLHPNVDKEDGNESETHGVRQPAMSESSARAPQRPVFSPGSNSQLNDREDKARQQPPRDQPPSRPTLQPKPPSFGQVQSHSADLQSGSNGGIPQSFYQQSSDMQRPLQEPSQFADRHRGVTPETPLPDYPSMHPSQPPNFAVPVNANAMLNPPVPFGYHPFPPHDGAPPFYVNPYDMRRQDSASEVGGDQSSLLGFPPGSATGSNFPANYPQPLSAGTGGLPFEQGHGGMAMDPRDAKGILAPQSMPLPPPPPLPPMSHLNQKYYSGEFGHNGHGYGWQHDTREAFGGQD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0260 440 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Prci12g0260 440 MobiDBLite consensus disorder prediction 153 294 - -
Prci12g0260 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Prci12g0260 440 MobiDBLite consensus disorder prediction 220 258 - -
Prci12g0260 440 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Prci12g0260 440 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Prci12g0260 440 MobiDBLite consensus disorder prediction 394 416 - -
Prci12g0260 440 MobiDBLite consensus disorder prediction 421 440 - -
Prci12g0260 440 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Prci12g0260 440 MobiDBLite consensus disorder prediction 168 195 - -
Prci12g0260 440 MobiDBLite consensus disorder prediction 394 408 - -
Prci12g0260 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 430 IPR040383 GO:0016567|GO:0061630
Prci12g0260 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0260 Prci-Chr12 2114195 2119786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0260 1 437 C2H2 Transcription Factor Family AT5G01160 43.567 6.42e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0260 K15685 - gmx:100817582 624.78