Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0213 ATGACTGGAAATTGCTTCGGTGCCACGAATTGGTGTAAACCTAAACGGAGGAATTATCCTAATGATCAGTCACGCGAACAAGTGATATCAACTAAAAGATTTAGTTATAATTCTTTGAGATCAGCAACAGGAGACTTTCATCCATCCAACAGAATTGGTAGAGGAGGTTATGGAGTTGTCTACAAGGGAGTCTTAAGGGATGGAACTCAAGTTGCTATCAAATCTCTTTCTGTGGAATCTAAACAAGGGACAAGAGAATTCATGACAGAGATTGATATGATCTCAAACATAAGGCATCCAAACCTTGTTCAACTAGTTGGCTGCTGTATTGAGGATAACCATCGCATATTGGTCTATGAATTTCTGGAAAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCTCAAAATAAATGTGTTGCTCTAGATTGGCCAAAGAGGGCTTCCATTTGCCGTGGTACAGCTTCTGCTCTTGCATTTCTTCACGATGAGGTTCAGCCTAATATCGTTCATAGAGATATCAAAGCTAGCAACATACTGCTTGATGAGAACTTCAATCCCAAAATAGGGGACTTTGGCCTTGCGAAGCTTTTTCCTGACAATGTCACCCATCTTAGTACGCGAGTGGCTGGAACTGTGGGATATCTTGCACCAGAATATTCACTTCTAGGACAGCTTACGAAAAAGGCAGATGTATACAGTTTTGGCGTCCTCATGCTTGAAGTAATTAGTGGTAGAAGCAGTAGCAAAGCTGCATTTGGAGAAAAGCTTCTGGTTCTTGTGGAATGGATCTGGAAGCTGAAAGAAGAAAATAAGCTTCTGGACATTGTTGATCCAGAACTAACTTGCTATGATGAGACTGAGGTCATGCGTTTCATTAAGGTTGCTCTGTTTTGTACCCAAGCAGCTGCTCATCATAGACCCACCATGAAGCAAGTTGTGGAAATGCTCTTCAAGGAAGTTCACCTTAATGACAAGGCTTTGACAGGGCCTGAAGTTCATAGGTGGCATCATGCCTCCAGAAAAGCTGTAAATTTTTTGGAAGACACATCAACTTCTCAAGTGGATAAGTCTAAAAGACCTGAAATTTCGCACATAAGCTTGAACCAGTTTGGTCGTTCTGATATCATGACAGAGATGCTTCCTAGATGA 1149 0.4143 MTGNCFGATNWCKPKRRNYPNDQSREQVISTKRFSYNSLRSATGDFHPSNRIGRGGYGVVYKGVLRDGTQVAIKSLSVESKQGTREFMTEIDMISNIRHPNLVQLVGCCIEDNHRILVYEFLENNSLASSLLGSQNKCVALDWPKRASICRGTASALAFLHDEVQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHLSTRVAGTVGYLAPEYSLLGQLTKKADVYSFGVLMLEVISGRSSSKAAFGEKLLVLVEWIWKLKEENKLLDIVDPELTCYDETEVMRFIKVALFCTQAAAHHRPTMKQVVEMLFKEVHLNDKALTGPEVHRWHHASRKAVNFLEDTSTSQVDKSKRPEISHISLNQFGRSDIMTEMLPR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0213 382 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
Prci12g0213 382 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Prci12g0213 382 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 340 - -
Prci12g0213 382 Gene3D Phosphorylase Kinase; domain 1 9 121 - -
Prci12g0213 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Prci12g0213 382 FunFam cold-responsive protein kinase 1 17 121 - -
Prci12g0213 382 CDD STKc_IRAK 52 316 - -
Prci12g0213 382 Pfam Protein kinase domain 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0213 382 ProSiteProfiles Protein kinase domain profile. 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0213 382 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Prci12g0213 382 SMART serkin_6 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g0213 382 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0213 Prci-Chr12 1575337 1579406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0213 21 366 Receptor kinase-like Gene Family AT1G53430 48.276 4.71e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci12g0213 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0213 - - gmx:100785766 560.836